Plant FIBer expression Database

Lus10032435 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24040 625 / 0 TREHALASE1, ATTRE1 trehalase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023034
[exp]
1095 / 0 AT4G24040 683 / 0.0 trehalase 1 (.1)
Lus10023035
[exp]
790 / 0 AT4G24040 667 / 0.0 trehalase 1 (.1)
Lus10032434
[exp]
620 / 0 AT4G24040 540 / 0.0 trehalase 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G144000
[exp]
768 / 0 AT4G24040 706 / 0.0 trehalase 1 (.1)
Potri.001G087100
[exp]
762 / 0 AT4G24040 685 / 0.0 trehalase 1 (.1)
Potri.003G143900
[exp]
739 / 0 AT4G24040 692 / 0.0 trehalase 1 (.1)
Potri.006G068300
[exp]
216 / 4e-68 AT4G24040 156 / 9e-46 trehalase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0059 6_Hairpin PF01204 Trehalase Trehalase
Representative CDS sequence
>Lus10032435 pacid=23168605 polypeptide=Lus10032435 locus=Lus10032435.g ID=Lus10032435.BGIv1.0 annot-version=v1.0
ATGGACAACAACCATCTCCTTACCTTCTCCCTCTTCCTACTGGTCGTCCCTTCCATCTTATCCCACCCCATTTCCGCCGCCACATGCGGCGGCGCCGGCA
GCGATCAGGGTCCCGTAGTACCCACTCCACCTCTGCTTTCATTTCTGGTACGGCTGCAAGAAACGGCGCTGCAGACTCTCGGCGGAGGGAACAATTTCGA
CCCCAAATCCTACGTCGACGTCTCCCTCAAGTTCAACCTCTCTACCACCCAGAAGGTGTTCGACGGTTTGCCGAGGAGACGGAATGGCACTGTTCCGGCT
CGGGCGTTCCAGAGGTTTGTGACGGAGTACTTGGAGAGTGCTGGGGATGGTCTAGTGGTCCATCAGCCGGTAGATTTTGTGGCGGAGCCTGAAGGGTTCT
TGCCCAAGGTGAAGAACGCGAAAGTCAGGGCTTGGGCGCTGGAAGTTCATTCCTTGTGGAAGAATTTGAGCAGGAAGGTCTCTGATGAGGTCAGGGAATC
ACCTAACTTGCACACTTTGCTTCCCTTGCCGGGTCCCGTTGTGATTCCTGGGTCACGTTTCAGGGAGGTTTATTATTGGGATTCTTACTGGGTCATCAGG
GGTCTGATGGCAAGCAAAATGTACGAAACTGCGAAATCAATAGTGACTAATCTGACATACCTCTTGGATACATATGGACATGTCCTGAATGGTGCGAGGT
CTTATTACACTAATAGAAGTCAGCCTCCACTTCTCAGTGCAATGGTGTATGAGATATATAACAGGACAGGGGACGTGAAATTCGCCATGAAGGCACTGCC
TGCCCTGATCAAAGAGCATGAGTTTTGGACTTCTGGTCAACACAACATTACTATCCATGATGGAAAAGCGGCCAAACACAGCTTGAGCCGGTATTATGCA
ATGTGGAATACACCTAGGCCTGAATCCGCAACTATTGACAGGGATTCTGCTGCCAACATCTCAAATGCTTGTGAGAAGCAGAAGTTTTACAGAGAAGTAG
CATCAACTGCTGAGAATACATCTGATTTCACTACACTGTCAACAACATCCATTTTACCTGTTGATTTGAACACTTACTTGCTAAAGCTGGAACTTGACAT
TGCAACGTTGGCCAAAGTTACGGGAAAGTCGACAATTGCTAGAAGCTTCTCCAAAGCCTCTGAAGCAAGAATACAGGCTTTGAAATCAGTTTTCTGGAAT
GCTGAGCAAGGGCAGTGGTTCGATTACTGGCTTAATCGTGGATCCTCTCGCGAGGGTTTTAGCTCCCATACGCGGAAAGGCTCCAACCAAAATCAGAATG
CATTTGCCTCTAACTTTGTCCCCTTGTGGATTGATGAGTTCCATTCAGACGAAGTTTTGGTTGAGCAAGTGTTGAAAAGTTTCCAAAAGTCAGGCCTTAT
TCGCGCCACTGGAATCGCTACATCGCTGACAAACTCAGGACAACAATGGGACTTTCCAAATGGATGGGCGCCACTACAGCACCTAATCGTGGAAGGCCTA
GCTCGATCCGGGTCAAAGAAGGCGAAAGAATTGGCAGAAGAGATAGCAGTGAGATGGATAAACAGTAACTATATCGTGTACAACAAAACTGGAGCAATGC
ATGAGAAGCTTGACGTGCAAGCTTGTGGGGAGTTTGGCGGCGGTGGAGAGTACGTTCCTCAGACTGGTTTTGGGTGGACAAATGGAGTGGTATTGGCATT
TCTGGAGGAGTTTGGGTGGCCACATGACAGAGAGCTCGGCTGCTGA
AA sequence
>Lus10032435 pacid=23168605 polypeptide=Lus10032435 locus=Lus10032435.g ID=Lus10032435.BGIv1.0 annot-version=v1.0
MDNNHLLTFSLFLLVVPSILSHPISAATCGGAGSDQGPVVPTPPLLSFLVRLQETALQTLGGGNNFDPKSYVDVSLKFNLSTTQKVFDGLPRRRNGTVPA
RAFQRFVTEYLESAGDGLVVHQPVDFVAEPEGFLPKVKNAKVRAWALEVHSLWKNLSRKVSDEVRESPNLHTLLPLPGPVVIPGSRFREVYYWDSYWVIR
GLMASKMYETAKSIVTNLTYLLDTYGHVLNGARSYYTNRSQPPLLSAMVYEIYNRTGDVKFAMKALPALIKEHEFWTSGQHNITIHDGKAAKHSLSRYYA
MWNTPRPESATIDRDSAANISNACEKQKFYREVASTAENTSDFTTLSTTSILPVDLNTYLLKLELDIATLAKVTGKSTIARSFSKASEARIQALKSVFWN
AEQGQWFDYWLNRGSSREGFSSHTRKGSNQNQNAFASNFVPLWIDEFHSDEVLVEQVLKSFQKSGLIRATGIATSLTNSGQQWDFPNGWAPLQHLIVEGL
ARSGSKKAKELAEEIAVRWINSNYIVYNKTGAMHEKLDVQACGEFGGGGEYVPQTGFGWTNGVVLAFLEEFGWPHDRELGC

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G24040 TREHALASE1, ATT... trehalase 1 (.1) Lus10032435
[exp]
0 1
AT5G03720 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOC... Lus10014369
[exp]
1.4 0.8661
AT3G56400 WRKY ATWRKY70, WRKY7... ARABIDOPSIS THALIANA WRKY DNA-... Lus10025133
[exp]
3.2 0.8529
AT5G25820 Exostosin family protein (.1) Lus10014424
[exp]
5.5 0.8305
AT3G56400 WRKY ATWRKY70, WRKY7... ARABIDOPSIS THALIANA WRKY DNA-... Lus10025216
[exp]
5.7 0.8477
AT2G43180 Phosphoenolpyruvate carboxylas... Lus10025529
[exp]
6.3 0.8077
AT2G40080 ELF4 EARLY FLOWERING 4, Protein of ... Lus10028288
[exp]
8.1 0.8235
AT1G49330 hydroxyproline-rich glycoprote... Lus10015036
[exp]
11.0 0.7929
AT3G56710 SIB1 sigma factor binding protein 1... Lus10027279
[exp]
12.2 0.8339
AT4G21440 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 10... Lus10033737
[exp]
12.3 0.7823
AT1G07420 SMO2-1, ATSMO1,... Arabidopsis thaliana sterol 4-... Lus10001556
[exp]
12.7 0.7724

Lus10032435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.