Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24320 505 / 3e-170 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G42010 493 / 2e-165 Transducin/WD40 repeat-like superfamily protein (.1) AT1G64610 486 / 2e-163 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G53500 465 / 5e-155 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 403 / 5e-129 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15470 384 / 5e-121 Transducin/WD40 repeat-like superfamily protein (.1) AT5G02430 315 / 6e-95 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48870 301 / 8e-93 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37670 302 / 3e-90 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 75 / 3e-14 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023033 [exp] 1421 / 0 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017312 [exp] 834 / 0 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003206 [exp] 808 / 0 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10022377 [exp] 479 / 2e-160 AT5G24320 530 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003974 [exp] 333 / 7e-101 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024399 [exp] 328 / 3e-99 AT2G37670 850 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10020846 [exp] 317 / 6e-99 AT1G48870 407 / 3e-135 Transducin/WD40 repeat-like superfamily protein (.1) Lus10033525 [exp] 305 / 2e-94 AT1G48870 400 / 1e-132 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039934 [exp] 294 / 1e-88 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G086600 [exp] 873 / 0 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G144400 [exp] 865 / 0 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G174100 [exp] 644 / 0 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G009700 [exp] 604 / 0 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 570 / 0 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G122500 [exp] 414 / 4e-132 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G403400 [exp] 404 / 4e-128 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G110500 [exp] 394 / 9e-128 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G057600 [exp] 369 / 4e-118 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G084600 [exp] 337 / 3e-103 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10032436 pacid=23168691 polypeptide=Lus10032436 locus=Lus10032436.g ID=Lus10032436.BGIv1.0 annot-version=v1.0 ATGGAGAGTTGCAGTGAGGATGAGCGATTCTTCGATACTCGAGAAGAAGAGGTCTCTCCATCCTCTGTTTGGGCTTCAGATTCAGTTTCCCCTAATTGCC AGTTCGAGATTTGGACGAAGAATCTGGAGAGCGTCGAGGATCGGCGCCGTAGGTTCTTTAGATGGATGAATCTGAGTTCCGATCCAAATTCGTTGGAGGA ATTTGAAGCGGGGATTTCCGAGGAGAATAAGAAGATCCAATTAGGGTTTGATAGGGTTATGAATGATAGCGGCGCAGTGTTGAGAACTTCTGGTTCTGAA GAAGAAGGGTTCTGGTCTGACACTTTGTCTAGGTCTACTTCTTGTCAGTCAGCTGAAGCTCGGGAATCGTTTGATGATTGTGGTGATGAGGAGGTGGATT TCAAGTACAAAATCAGGAATTTGGATGACGGGAGAGAGTTTGTTCTCCAAGAGCTCGATCAAGATGGTAGGTTTAGTCGATTTCGTGAAGTGGGATCGAA TCGGTCTCTTAACTTTGAAGAGTTCCAGAGGAGTATTGGATGGTCACCTTTGATTCAGAGGCTTCTACGTAGGTATGCGGATGAGGCAAGGAACATGGTG GAGGTTAGGAAGAAACCTAAGAGGGGTTGGCTCAGTAGGTTTGGATCACCATCGAGAGTACTCGACAACAAGAGCGAGGTGAATGCTGTCGAACTATCTC GCCTAGGGTCGAAGAATATGCAAAGACTTAAAGTTCATTCCCACAAGAAGAAGACAAAACAGTTGTCTTCTCTCTATACTGGACAGGAGTTTCTGGCTCA TAAGGGGTCTATACTGACAATGAAGTTCAGTCTTGATGGCCAATACTTAGCTAGTGGTGGAGACGATGGTATTGTGCGAGTTTGGAAGGTGATTGAGGAT GATAGATCGGACCAATTCGATGTCCCAACGACTGATCCGTCATGTCTGTACTTTGCAATAGACCATAAGTCGAATATAACTTCCGTGGGTGTTGATGCAA TCTCAAAGGACAGTGGCAAAACAAAGAGGCATATATCATCAGACTCAACTTGTGTTGTTTTGCCACCAAAAGTGTTCAGGGTTCTCGAGAAGCCTCTGCA TGAGTTCCAGGGACACAATGGCGAAGTTTTGGATCTCTCCTGGTCTAAGCAGAGGTTGCTCCTGTCTTCTTCTGATGATAACACTGTACGCCTGTGGCAA GTGGGTCGTGAAAAATGCCTCAGGGTTTTCCATCATAATAACTATGTGACTTGTGTTCATTTCAATCCTGTGGACGAAGACTTTTTCATTAGTGGTTGTA TAGATGGAAAAGTCCGCATCTGGCAAGTGTCTGGCTGCCAGGTTGTTGATTATAAGGATATCGGAGAGATAGTCACTGCTGTAGCTTATCGTCCTTCTGG AGAGGGAGCTCTTGTGGGAACCATGACTGGAAACTGCCTTTTCTACGGGATTATCGATAATAAAATGAGACAGGACACTGAAATTTCTTTGCAAGGCAAA ACAAAGTTGCCTGGCAAGAGGATAACTGGCTTTGAGTTCTCGCCAAGTGATCCTAGTAAAGTAATCGTCACATCGGCTGATTCTCTCGTGCGAGTTCTCT GCAGCACGGATGTTATATGCAAATTTAAAGTATCGGGCCTTCGGGTTGCTGCGAACCAGATGCATGCTACTTTTACCTCAGATGGGAAGCATGTTGTCTC TACGAGTGACGACTCAAATGTCCACGTATGGAATTACGATAAACAGGAAAAGCCATCTTCTCGAGCTAAGCATATCCGCTCCTACGAGAGCTTCATGTCC CGGAATGCTTCCGTGGCAATTCCTTGGCGTGGGATTGAAACTGTGCCGGCCACAATCCTATCTCCACCACCTCCAGCCGTTGGGGATGTGCATGGAACTA GCAGCAATGCTGGGAATAACCATCGCAATAGTATGGTAACTTCACCGGATTGTTTCTCTCTTACTCGTGGGTTTTTGTTAGATTCCTCGATCCGAGGATC TGCGACCTGGCCTGAGGAGAAACTCCCCAATTCGAAACCGGTTTCAGTGTCGACTCCAAAATTTAAGTCCGAGTTCAAGTTTTTGAAGAATGCATGCCAG AGTATGTTCAACTCTCACATGTGGGGGTTGGTGATCGTCACTGCCGGCTGGGATGGACGAATCAGAACGTACCTCAATTACGGGTTACCTCTTCGTGTCT GA
AA sequence Show only first row Show all	>Lus10032436 pacid=23168691 polypeptide=Lus10032436 locus=Lus10032436.g ID=Lus10032436.BGIv1.0 annot-version=v1.0 MESCSEDERFFDTREEEVSPSSVWASDSVSPNCQFEIWTKNLESVEDRRRRFFRWMNLSSDPNSLEEFEAGISEENKKIQLGFDRVMNDSGAVLRTSGSE EEGFWSDTLSRSTSCQSAEARESFDDCGDEEVDFKYKIRNLDDGREFVLQELDQDGRFSRFREVGSNRSLNFEEFQRSIGWSPLIQRLLRRYADEARNMV EVRKKPKRGWLSRFGSPSRVLDNKSEVNAVELSRLGSKNMQRLKVHSHKKKTKQLSSLYTGQEFLAHKGSILTMKFSLDGQYLASGGDDGIVRVWKVIED DRSDQFDVPTTDPSCLYFAIDHKSNITSVGVDAISKDSGKTKRHISSDSTCVVLPPKVFRVLEKPLHEFQGHNGEVLDLSWSKQRLLLSSSDDNTVRLWQ VGREKCLRVFHHNNYVTCVHFNPVDEDFFISGCIDGKVRIWQVSGCQVVDYKDIGEIVTAVAYRPSGEGALVGTMTGNCLFYGIIDNKMRQDTEISLQGK TKLPGKRITGFEFSPSDPSKVIVTSADSLVRVLCSTDVICKFKVSGLRVAANQMHATFTSDGKHVVSTSDDSNVHVWNYDKQEKPSSRAKHIRSYESFMS RNASVAIPWRGIETVPATILSPPPPAVGDVHGTSSNAGNNHRNSMVTSPDCFSLTRGFLLDSSIRGSATWPEEKLPNSKPVSVSTPKFKSEFKFLKNACQ SMFNSHMWGLVIVTAGWDGRIRTYLNYGLPLRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24320			Transducin/WD40 repeat-like su...		Lus10032436 [exp]	0	1
AT5G05200			Protein kinase superfamily pro...		Lus10030509 [exp]	3.0	0.8888
AT5G05200			Protein kinase superfamily pro...		Lus10012865 [exp]	4.7	0.8807
AT3G16940	CAMTA		calmodulin binding;transcripti...		Lus10016873 [exp]	6.6	0.8440
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10004317 [exp]	6.7	0.8385
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007633 [exp]	6.9	0.8493
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10015993 [exp]	7.4	0.8550
AT5G24320			Transducin/WD40 repeat-like su...		Lus10023033 [exp]	7.9	0.8137
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010012 [exp]	8.5	0.8569
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10017377 [exp]	9.8	0.8536
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040790 [exp]	11.8	0.8271

Compare expression of checked genes

Lus10032436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.