Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 276 / 4e-87 RLK1 receptor-like protein kinase 1 (.1) AT5G24080 229 / 2e-71 Protein kinase superfamily protein (.1) AT1G34300 233 / 3e-70 lectin protein kinase family protein (.1) AT4G00340 228 / 4e-68 RLK4 receptor-like protein kinase 4 (.1) AT2G19130 225 / 3e-67 S-locus lectin protein kinase family protein (.1) AT4G32300 219 / 3e-65 SD2-5 S-domain-2 5 (.1) AT5G35370 214 / 7e-63 S-locus lectin protein kinase family protein (.1) AT3G25560 209 / 1e-62 NIK2 NSP-interacting kinase 2 (.1.2.3) AT2G23950 206 / 3e-61 Leucine-rich repeat protein kinase family protein (.1) AT3G53380 206 / 1e-60 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042940 [exp] 568 / 0 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10030400 [exp] 308 / 4e-102 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 302 / 3e-96 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 290 / 1e-91 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 282 / 2e-88 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 276 / 3e-86 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 270 / 6e-84 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 268 / 2e-83 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10006052 [exp] 249 / 7e-76 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G060000 [exp] 407 / 5e-137 AT5G60900 400 / 3e-128 receptor-like protein kinase 1 (.1) Potri.013G059900 [exp] 353 / 4e-116 AT1G34300 333 / 9e-102 lectin protein kinase family protein (.1) Potri.T085100 [exp] 312 / 3e-100 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211866 [exp] 300 / 3e-100 AT5G60900 346 / 4e-113 receptor-like protein kinase 1 (.1) Potri.001G014600 [exp] 307 / 3e-98 AT5G60900 666 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084351 [exp] 295 / 3e-98 AT5G60900 419 / 4e-141 receptor-like protein kinase 1 (.1) Potri.001G014100 [exp] 306 / 6e-98 AT5G60900 669 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211366 [exp] 306 / 1e-97 AT5G60900 568 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085150 [exp] 303 / 1e-96 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211700 [exp] 301 / 7e-96 AT5G60900 527 / 5e-177 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10032438 pacid=23146236 polypeptide=Lus10032438 locus=Lus10032438.g ID=Lus10032438.BGIv1.0 annot-version=v1.0 ATGACAAGAAGTAGGAATGCGGTTGGGATCACTTTCACCAAGCTTACGTACGGGGAGCTTCAAGTGGCCACCAAAGGATTTAGCCACGCTATAGGCAGAG GTTCATCAGCCACTGTCTACCTAGGGACCTTGCTATTCAATGATCTACATATTGATTTGGCTGTGAAACGATTAATGGAGAAAGATATAGAGACTAGCGA CCAAGAGTTCGCCACGGAGTTGAAGGTCATAGGCAGGACGCACCACAAGAACTTGGTCAGATTGTTGGGATTTTGCGTGGAGAACAATCAACGGATCCTG GTTTACGAGTGCATGTCGAATGGGAGCATGTCGCGTGTCTTGCAAGCAGGAGAAAAGCTGAGCTGGGGTTTGAGAGCACATATTGTGATAGGAGTGGCGA GGGGATTACTGTACCTCCACGATCAATGTGCCGAACAGATCATCCACTGCGACATCAAGCCGGAAAACATCCACCTGGACGATGATTACACGGCTAAAAT AGCAGATTTCGGGCTGTCCAAACTGCTAAAGAAGGAGCAAACTAGGACGGAGGCCAATGCTAGAGGAACAGCAGGGTACATGGCGCCAGAGTGGCTGAGG AATGGGCCGGTGACGTCAAAGGTTGACGTTTATAGTTTCGGAGTGGTGTTGCTGGAGATCATATGTTGTAGGAGGCACATTGAGTTGCATAGGGTTAGTG AAGAGAGTGAAGAGGAGGATCTAGTCCTACGGGATTGGGTATTGAGTTATTTGGTGAATGGGAAGCTTGAGGCTGTGGTGAGTCATGATCCAGAAGTGGT GAGTGATATAAAGAGATTTGAGAGAATGGCGTTGGTGGGATTGTGGTGCAGTCATCCTGATCCGTTTCTGAGGCCTTTGATGAAAAGAATCGTGCAGATG GTAGAGGGAACTGTGGATTTTGGTATTCCTCCTCAACTTGATGATAGAATGTCATCTGAATTTGACCACTCTCTTTAA
AA sequence Show only first row Show all	>Lus10032438 pacid=23146236 polypeptide=Lus10032438 locus=Lus10032438.g ID=Lus10032438.BGIv1.0 annot-version=v1.0 MTRSRNAVGITFTKLTYGELQVATKGFSHAIGRGSSATVYLGTLLFNDLHIDLAVKRLMEKDIETSDQEFATELKVIGRTHHKNLVRLLGFCVENNQRIL VYECMSNGSMSRVLQAGEKLSWGLRAHIVIGVARGLLYLHDQCAEQIIHCDIKPENIHLDDDYTAKIADFGLSKLLKKEQTRTEANARGTAGYMAPEWLR NGPVTSKVDVYSFGVVLLEIICCRRHIELHRVSEESEEEDLVLRDWVLSYLVNGKLEAVVSHDPEVVSDIKRFERMALVGLWCSHPDPFLRPLMKRIVQM VEGTVDFGIPPQLDDRMSSEFDHSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10032438 [exp]	0	1
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039482 [exp]	7.2	0.6353
AT1G31500			DNAse I-like superfamily prote...		Lus10000005 [exp]	9.9	0.5631
AT1G68040			S-adenosyl-L-methionine-depend...		Lus10013484 [exp]	20.2	0.5699
AT3G26000			Ribonuclease inhibitor (.1)		Lus10011378 [exp]	21.1	0.5985
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038525 [exp]	24.2	0.5715
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Lus10034238 [exp]	36.0	0.5703
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10022745 [exp]	37.5	0.5392
AT2G22070			pentatricopeptide (PPR) repeat...		Lus10001225 [exp]	38.7	0.5230
					Lus10021453 [exp]	45.5	0.5513
AT5G19730			Pectin lyase-like superfamily ...		Lus10034981 [exp]	51.8	0.5431

Compare expression of checked genes

Lus10032438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.