Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48160 365 / 3e-124 E2F_DP E2FE, E2L3, DEL1 E2F-LIKE 3, DP-E2F-like 1 (.1.2) AT3G01330 294 / 5e-97 E2F_DP E2FF, E2L2, DEL3 E2F-LIKE 2, DP-E2F-like protein 3 (.1) AT5G14960 253 / 5e-81 E2F_DP DEL2, E2L1, E2FD DP-E2F-like 2 (.1) AT2G36010 67 / 9e-12 E2F_DP ATE2FA, E2F3 E2F transcription factor 3 (.1.2.3) AT5G22220 64 / 6e-11 E2F_DP ATE2FB, E2F1 E2F transcription factor 1 (.2.3) AT1G47870 57 / 1e-08 E2F_DP ATE2FC, ATE2F2, E2FC ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042941 [exp] 712 / 0 AT3G48160 371 / 1e-126 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10039455 [exp] 280 / 2e-89 AT3G01330 299 / 2e-97 E2F-LIKE 2, DP-E2F-like protein 3 (.1) Lus10005840 [exp] 187 / 6e-57 AT3G01330 202 / 8e-64 E2F-LIKE 2, DP-E2F-like protein 3 (.1) Lus10004217 [exp] 64 / 6e-11 AT2G36010 456 / 4e-158 E2F transcription factor 3 (.1.2.3) Lus10016972 [exp] 64 / 8e-11 AT2G36010 446 / 4e-154 E2F transcription factor 3 (.1.2.3) Lus10029421 [exp] 64 / 1e-10 AT2G36010 467 / 1e-161 E2F transcription factor 3 (.1.2.3) Lus10005209 [exp] 62 / 4e-10 AT5G22220 421 / 4e-146 E2F transcription factor 1 (.2.3) Lus10021298 [exp] 61 / 7e-10 AT2G36010 436 / 2e-149 E2F transcription factor 3 (.1.2.3) Lus10033151 [exp] 56 / 2e-08 AT1G47870 275 / 3e-89 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G075300 [exp] 456 / 4e-160 AT3G48160 355 / 2e-120 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Potri.015G070300 [exp] 451 / 1e-158 AT3G48160 383 / 9e-132 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Potri.009G161900 [exp] 65 / 3e-11 AT5G22220 422 / 7e-145 E2F transcription factor 1 (.2.3) Potri.004G200800 [exp] 65 / 3e-11 AT5G22220 457 / 1e-158 E2F transcription factor 1 (.2.3) Potri.006G205100 [exp] 65 / 4e-11 AT2G36010 435 / 7e-150 E2F transcription factor 3 (.1.2.3) Potri.016G072300 [exp] 64 / 8e-11 AT2G36010 452 / 6e-157 E2F transcription factor 3 (.1.2.3) Potri.002G023400 [exp] 54 / 7e-08 AT1G47870 274 / 1e-88 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF02319 [flax] [poplar] E2F_TDP E2F/DP family winged-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10032439 pacid=23146327 polypeptide=Lus10032439 locus=Lus10032439.g ID=Lus10032439.BGIv1.0 annot-version=v1.0 ATGAATTCTGGTCTTACCAACGAGACCGAGTCCTCTTCCCGCCACCATAGCTACAGTCGCAAGCAGAAATCTCTCGGTCTCTTATGCACCAACTTCTTGA ACTTGTACAACCGAGATGGAACCGAAGTCGTTGGCCTTGACGACGCCGCCGCTAGATTAGGAGTTGAGAGGCGACGGATCTACGACATTGTCAATGTTTT AGAAAGCGTTGGGGTTTTGTGCAGAAGAGCTAAGAATCAGTACACATGGAAAGGATTCGCGGCAATGCCAGAGACGCTCCGAGGATTGAAGGTTCAGGGT ATGAAGGAGAATTTCGGGTTGTCTGACACTAAGAACGACAATGGAGCTAAAGTCCCTAGTGGTGATGGCAATGAGGTGGAAGAAGATGATGAAGAGGAAG ATGTCCGCGATCTGGAGTCCATCACTGGTAGCCAGAATGAGGCTGCTGCTGCTGATAGTGGTAACGGCAAGTCTGCAGCTGCATCTAAGCAAGATAACAG GAAGGAGAAATCTTTGGGACTTCTAACCCAGAATTTTGTGAAGCTTTTCCTATGCTCTAAGGCTGAACTGATCTCTCTTGACAATTCAGCTAAGCTATTG CTAGGAGATGGTCATTCGTTGTCCATATTGAGAACCAAAGTCAGAAGGCTTTACGATATTGCAAATGTGCTTTCTTCCCTGAAGCTTATCGAAAAGACTC ACACTGCTGACTCCAGGAAACCTGCATTTAGATGGATGGGGCTGAACAAAAGCCACGAGAGCAGCAGCAATGCTCCTTTGCCCGATATTTGTGAATCAAG GAAAAGGGTTTTTGGGGCAGATGTGACTAACATTAGTTTCAAAAGGAATAAGCTTGATTCTTCAGCTCACGATGATGATAAAATCAGGAAAAGTAAGATG CATAGTGACCAAGTAAAGGTGGATAATGAGGTGATTGGAATTGAGGGAGCCATCTTGAGCCAGGAATCAGTTCATGAGTCGAGGAGTTACCAGTTTGGTC CCTTTGGACCAGCTGCATTGCTCAGAGACAGTGGAACTGTAAGAGAAGCTAATGAGGTTCGTGATTGGGACACTCTTGGCTCAACTTTTCGGCCTCAGTA CCATAATCAAGCTCTGAGGGATCTGTTTGTTCACTACATGGAAGCTTGGCAGTCATGGTACACAGAAGTTTCGGAGAAGAAGCCTATCCAACAAATTTCG TGA
AA sequence Show only first row Show all	>Lus10032439 pacid=23146327 polypeptide=Lus10032439 locus=Lus10032439.g ID=Lus10032439.BGIv1.0 annot-version=v1.0 MNSGLTNETESSSRHHSYSRKQKSLGLLCTNFLNLYNRDGTEVVGLDDAAARLGVERRRIYDIVNVLESVGVLCRRAKNQYTWKGFAAMPETLRGLKVQG MKENFGLSDTKNDNGAKVPSGDGNEVEEDDEEEDVRDLESITGSQNEAAAADSGNGKSAAASKQDNRKEKSLGLLTQNFVKLFLCSKAELISLDNSAKLL LGDGHSLSILRTKVRRLYDIANVLSSLKLIEKTHTADSRKPAFRWMGLNKSHESSSNAPLPDICESRKRVFGADVTNISFKRNKLDSSAHDDDKIRKSKM HSDQVKVDNEVIGIEGAILSQESVHESRSYQFGPFGPAALLRDSGTVREANEVRDWDTLGSTFRPQYHNQALRDLFVHYMEAWQSWYTEVSEKKPIQQIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Lus10032439 [exp]	0	1
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10016526 [exp]	1.0	0.9515
AT5G63540		BLAP75, ATRMI1	RECQ MEDIATED INSTABILITY 1, D...		Lus10022440 [exp]	1.4	0.9500
AT3G16490		IQD26	IQ-domain 26 (.1)		Lus10043033 [exp]	5.7	0.9424
AT1G63100	GRAS		GRAS family transcription fact...		Lus10006322 [exp]	6.0	0.9471
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10027818 [exp]	7.1	0.9474
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10012916 [exp]	7.5	0.9329
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10040514 [exp]	8.1	0.9336
AT5G53480			ARM repeat superfamily protein...		Lus10041453 [exp]	8.4	0.9462
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10010483 [exp]	8.8	0.9447
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10013199 [exp]	9.9	0.9427

Compare expression of checked genes

Lus10032439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.