Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74910 721 / 0 ADP-glucose pyrophosphorylase family protein (.1.2.3) AT2G04650 662 / 0 ADP-glucose pyrophosphorylase family protein (.1) AT2G39770 180 / 7e-53 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT3G55590 175 / 6e-51 Glucose-1-phosphate adenylyltransferase family protein (.1) AT4G30570 172 / 2e-50 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G34970 47 / 2e-05 Trimeric LpxA-like enzyme (.1) AT4G18300 46 / 5e-05 Trimeric LpxA-like enzyme (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042942 [exp] 799 / 0 AT1G74910 734 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10024356 [exp] 192 / 3e-57 AT2G39770 666 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10004699 [exp] 191 / 5e-57 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10040265 [exp] 191 / 5e-57 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10001014 [exp] 121 / 4e-31 AT2G39770 476 / 1e-169 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10030156 [exp] 120 / 2e-30 AT2G39770 518 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10015338 [exp] 94 / 7e-23 AT1G74910 95 / 5e-24 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10010879 [exp] 85 / 1e-19 AT2G39770 246 / 1e-82 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10018991 [exp] 47 / 2e-05 AT2G34970 869 / 0.0 Trimeric LpxA-like enzyme (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G070500 [exp] 764 / 0 AT1G74910 736 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.012G075500 [exp] 748 / 0 AT1G74910 717 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.010G198800 [exp] 186 / 6e-55 AT2G39770 685 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G060100 [exp] 185 / 9e-55 AT2G39770 648 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.006G090300 [exp] 184 / 2e-54 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G006700 [exp] 166 / 2e-47 AT2G39770 619 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00483 [flax] [poplar] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Lus10032440 pacid=23146279 polypeptide=Lus10032440 locus=Lus10032440.g ID=Lus10032440.BGIv1.0 annot-version=v1.0 ATGGGTATTTCTGAGGAAAGAGTTGTTGCTGTGATCATGGTCGGCGGACCTACAAAAGGAACACGATTCAGGCCATTGTCATTGAATATCCCAAAGCCTC TATTCCCTCTAGCAGGGCAGCCAATGGTTCACCATCCTATATCTGCTTGTAAAAGGATTCCAAATTTGGCTCAGATCTATCTTGTCGGTTTCTATGAAGA GCGTGAATTCGCATGGTATGTTTCTGCCATCTCTAATGAACTTAGAGTGCCTGTCAGATATCTGAGAGAGGACAAACCTCATGGTTCAGCTGGTGGACTT TATAACTTCAGAGATCTGGTTATGGAAGATGATCCGACCCATATCTTCTTGCTAAATTGTGATGTTTGCTGCAGTTTCCCTCTCCCTGAAATGCTTGAGG CGCATAGACGATATGGGGGAATCGGTACTCTCCTTGTAATTAAGGTTTCTGCTGAGTCAGCCAGCCAGTTTGGTGAATTGGTAGCTGATCCAGACACCAA AGAATTATTGCATTATACGGAGAAACCTGAGACTTTTGTCAGCGACTTGATAAATTGTGGTGTCTATGTGTTCACTCCAGAGATCTTTACAGCAATCCAA GGAGTTTCTTCCCAACTCAAAGATAGAGCTAATCTCAGACGTGTTTCAAGCTTTGAAGCACTTCAGTCAGCTACGCGGAGTTTCCCCGCAGATTTTGTGA GGTTGGATCAGGACATTCTATCACCTCTTGCAGGAAAAAAGCAGTTGTACACATATGAAACCAGAGACTTCTGGGAACAAATAAAAACTCCGGGAATGTC TTTGAAATGCTCTTCTTTGTATCTTGCCCAATTCCGGTTCACTTCTCCTCATCTTTTGGCTAGTGGTGATGGTTCAAAGAGTGCCACTATTGTTGGTGAT GTTTATATCCATCCATCAGCAAAGGTTCATCCAACTGCTAAGCTAGGTCCGAATGTCTCGATATCAGCAAATGCTCGCATAGGACCAGGTGCAAGGCTTA TCAGTTGCATTATACTCGACGATGTTGAAGTCATGGAGAATGCAGTTGTGATTAATTCTATTGTTGGGTGGAAGTCTTCTATTGGAAAATGGTCTCGTGT CCAGGCTGAAGGAGTTTACAATGCAAAACTGGGAGTCACGATTCTCGGAGAAGCAGTTACAGTGGAAGATGAAGTAGTGGTGGTGAACAGCATTGTACTG CCACACAAGACTCTGAATGTTAGTGTTCAGGAAGAGATTATCTTATAA
AA sequence Show only first row Show all	>Lus10032440 pacid=23146279 polypeptide=Lus10032440 locus=Lus10032440.g ID=Lus10032440.BGIv1.0 annot-version=v1.0 MGISEERVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLAGQPMVHHPISACKRIPNLAQIYLVGFYEEREFAWYVSAISNELRVPVRYLREDKPHGSAGGL YNFRDLVMEDDPTHIFLLNCDVCCSFPLPEMLEAHRRYGGIGTLLVIKVSAESASQFGELVADPDTKELLHYTEKPETFVSDLINCGVYVFTPEIFTAIQ GVSSQLKDRANLRRVSSFEALQSATRSFPADFVRLDQDILSPLAGKKQLYTYETRDFWEQIKTPGMSLKCSSLYLAQFRFTSPHLLASGDGSKSATIVGD VYIHPSAKVHPTAKLGPNVSISANARIGPGARLISCIILDDVEVMENAVVINSIVGWKSSIGKWSRVQAEGVYNAKLGVTILGEAVTVEDEVVVVNSIVL PHKTLNVSVQEEIIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74910			ADP-glucose pyrophosphorylase ...		Lus10032440 [exp]	0	1
AT1G74910			ADP-glucose pyrophosphorylase ...		Lus10042942 [exp]	1.4	0.8660
AT4G01897			unknown protein		Lus10038061 [exp]	1.4	0.8689
AT4G23710		VAG2 ,VATG2 ,VH...	vacuolar ATP synthase subunit ...		Lus10021301 [exp]	4.2	0.8360
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10004514 [exp]	5.2	0.8492
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10010063 [exp]	5.3	0.8471
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10008953 [exp]	5.9	0.8395
AT1G10940		ASK1, SNRK2-4, ...	SNF1-related protein kinase 2....		Lus10019225 [exp]	6.5	0.8124
AT5G11960			Protein of unknown function (D...		Lus10013530 [exp]	9.2	0.7885
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10030294 [exp]	9.9	0.8024
AT5G61310			Cytochrome c oxidase subunit V...		Lus10025028 [exp]	11.0	0.8005

Compare expression of checked genes

Lus10032440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.