Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18060 885 / 0 transducin family protein / WD-40 repeat family protein (.1) AT2G01330 853 / 0 nucleotide binding (.1.2) AT5G52820 75 / 4e-14 WD-40 repeat family protein / notchless protein, putative (.1) AT5G67320 71 / 9e-13 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT4G34460 69 / 3e-12 ELK4, AGB1, ATAGB1 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) AT4G02730 66 / 2e-11 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 64 / 9e-11 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT3G15980 61 / 2e-09 Coatomer, beta' subunit (.1.2.3.4.5) AT2G43770 59 / 3e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 59 / 6e-09 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042944 [exp] 1212 / 0 AT3G18060 888 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10027252 [exp] 906 / 0 AT3G18060 979 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10038960 [exp] 899 / 0 AT3G18060 971 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10039597 [exp] 76 / 4e-14 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10029493 [exp] 74 / 2e-13 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10023579 [exp] 68 / 7e-12 AT4G34460 590 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10006916 [exp] 66 / 2e-11 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 66 / 3e-11 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10040464 [exp] 65 / 7e-11 AT4G34460 568 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041200 [exp] 921 / 0 AT3G18060 1000 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.012G049200 [exp] 919 / 0 AT3G18060 1018 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.009G058000 [exp] 76 / 2e-14 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.009G115300 [exp] 67 / 1e-11 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.004G153700 [exp] 64 / 1e-10 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.007G050100 [exp] 63 / 3e-10 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.002G051900 [exp] 61 / 6e-10 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 61 / 9e-10 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G179200 [exp] 60 / 5e-09 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2) Potri.001G221000 [exp] 59 / 5e-09 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10032444 pacid=23146391 polypeptide=Lus10032444 locus=Lus10032444.g ID=Lus10032444.BGIv1.0 annot-version=v1.0 ATGGTAGAACTCATAGAAAGCTACGCATCCGTCCCGTCCACGGAGCGAGGCCGGGGAATTCTAATCTCCGGCGACGCCAAATCCAACTCCATCCTCTACA CAAATGGACGGTCCGTCATCATCCGCTACCTCGACAAGCCCCTCAAGGTCGAGGTCTACGGCGAACACGGCTACCCCGTTACGGTCGCTCGTTATTCTCC TAACGGAGAGTGGATCGCATCCGCCGATACCTCTGGAACCGTAAGAATCTGGGGCGTCCACAACAACTTCGTCCTCCACAACGAATTCCGCGTCCTATCC GGCCGGATCGACGATCTGCAATGGTCCCCTGACATGCTGAGGATCGTCGTCTCCGGCGACGGGAAGGGAAAGTCGTTTGTACGAGCATTCATGTGGGATT CTGGAAGCACGGTGGGCGATTTCGACGGACATTCGAAAAGGGTGTTGAGTTGTGCGTTTAAACCAACACGCCCATTCCGCATTGTGAGTTGCGGAGAAGA TTTTGTTGTTAACTTCTATGAAGGCCCTCCGTTTAAGTTCATGCTCTCTCAGAGGCAACACACCAACTTTGTGAACTGCGTTAGATTTTCACCAGATGGC AGCAAGTGCATTACTGTAAGCTCTGATAAGAAAGGGCTAATCTACGATGGGAAGACTGGTGAAATGATTGGAGAGTTGTCCCAAGAAAATGCTCACACCG GCACCATATATGCTGTTAGTTGGAGTCCTGATAGCAAGAGGATACTTACTGCTTCAGCTGATAAGTCTGCCAAGGTATGGGAAATTTCCGAGGATGGAAA TGGGACAGTGGTAAAGACGTTAACATGTCCTGGTTCTGGTGGAGTTGAAGATATGCTGGTTGGAGGCCTTTGGCTAAATGACCACCTTATTGTTGTTTCC CTTAGCGGAGCAATTAACCTATTCTCTGCCAGTGATCTTGAGAAAGCCCCCGTCGTACTATCCGGACATATGAAAAATGTCACGGCGTTAAGTCTGCTTG GAAATGAGGAGAAGACGATTGTCACTAGCAGCTATGACGGACACATCATCAAATGGAATCAGGGCGTTGGTTATGCTGGGAAGCTAGAGAGGGGAAATAG TTCCCAGATCAAGTGTCTGGCAGCTGCTAAAGACGAGATCATGACATCTGGATTTGACAACAAGGTGCACAGGATGAGTCTACAAGCGAATGAATGCGGA AAATTGGAGGATGTCGATATCGGTAGCCAGCCTCAGGACTTATGCCTAGCGATAAACACTCCTGGGCTAGCCTTGGTTGCAACTGAAACGGCTGCTATTT TGATGGAGGGGTTAAAAGTACTGTCCAGTACAAAGTTGGACTTTGCTGCCACAGCATGCGCCATAAAACCTGACGGGAGTGAAGCCATTGTGGGTGCACA GGATGGAAAGTTGCATGTATACTCTGTCTCGGGTGATACCCTTACGGAAGAAGCAGTCCTTGAGAAGCATAGGGGTCCTATCAATGTCATACGCTACTCT CCAGATGTCACCATGTTTGCTTCTGCCGATTTGAACCGGGAAGCCGTTGTTTGGGATGGTTCATCCAGAGAGATTAAGCTTAACAACATGCTATTCCACA CGGCTCGAATCAACTGCCTTGCTTGGTCTCCGAGTAGCACATTTGTGGCAACTGGGTCTCTAGACACATGTGTCATCATATACGAAATCGGGAAGCCGGT TGCGAACCGGATCACCGTAAAACTAGCTCATCTAGGCGGAGTGTACGGTCTGGCTTTTACTGATGATTCCACGGTTATGAGCTCGGGAGAGGATGCTTTT GTACGTGTATGGAGGGTGACTTCTTCTGAATGA
AA sequence Show only first row Show all	>Lus10032444 pacid=23146391 polypeptide=Lus10032444 locus=Lus10032444.g ID=Lus10032444.BGIv1.0 annot-version=v1.0 MVELIESYASVPSTERGRGILISGDAKSNSILYTNGRSVIIRYLDKPLKVEVYGEHGYPVTVARYSPNGEWIASADTSGTVRIWGVHNNFVLHNEFRVLS GRIDDLQWSPDMLRIVVSGDGKGKSFVRAFMWDSGSTVGDFDGHSKRVLSCAFKPTRPFRIVSCGEDFVVNFYEGPPFKFMLSQRQHTNFVNCVRFSPDG SKCITVSSDKKGLIYDGKTGEMIGELSQENAHTGTIYAVSWSPDSKRILTASADKSAKVWEISEDGNGTVVKTLTCPGSGGVEDMLVGGLWLNDHLIVVS LSGAINLFSASDLEKAPVVLSGHMKNVTALSLLGNEEKTIVTSSYDGHIIKWNQGVGYAGKLERGNSSQIKCLAAAKDEIMTSGFDNKVHRMSLQANECG KLEDVDIGSQPQDLCLAINTPGLALVATETAAILMEGLKVLSSTKLDFAATACAIKPDGSEAIVGAQDGKLHVYSVSGDTLTEEAVLEKHRGPINVIRYS PDVTMFASADLNREAVVWDGSSREIKLNNMLFHTARINCLAWSPSSTFVATGSLDTCVIIYEIGKPVANRITVKLAHLGGVYGLAFTDDSTVMSSGEDAF VRVWRVTSSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18060			transducin family protein / WD...		Lus10032444 [exp]	0	1
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10003471 [exp]	2.4	0.9443
					Lus10006417 [exp]	7.9	0.9276
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10030709 [exp]	8.1	0.9351
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10001207 [exp]	8.8	0.8775
AT4G05160			AMP-dependent synthetase and l...		Lus10021431 [exp]	11.0	0.8148
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10025620 [exp]	11.4	0.9116
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10004239 [exp]	11.8	0.9233
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015169 [exp]	12.3	0.9272
AT5G01810		ATPK10, SnRK3.1...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030545 [exp]	13.0	0.8596
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10015734 [exp]	13.2	0.9216

Compare expression of checked genes

Lus10032444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.