Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23000 122 / 5e-32 Heavy metal transport/detoxification superfamily protein (.1) AT3G06130 121 / 9e-32 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G19090 115 / 7e-29 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT5G27690 96 / 2e-22 Heavy metal transport/detoxification superfamily protein (.1) AT3G05220 94 / 3e-21 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G56210 85 / 2e-18 Heavy metal transport/detoxification superfamily protein (.1) AT5G37860 76 / 1e-15 Heavy metal transport/detoxification superfamily protein (.1) AT1G06330 69 / 5e-14 Heavy metal transport/detoxification superfamily protein (.1) AT3G56891 66 / 7e-13 Heavy metal transport/detoxification superfamily protein (.1) AT5G66110 62 / 8e-12 HIPP27 heavy metal associated isoprenylated plant protein 27, Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041228 [exp] 117 / 7e-30 AT3G06130 149 / 3e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10004465 [exp] 100 / 5e-23 AT5G19090 122 / 2e-30 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10029942 [exp] 99 / 5e-23 AT5G19090 125 / 1e-31 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10031495 [exp] 95 / 7e-22 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10015174 [exp] 91 / 3e-20 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10031514 [exp] 86 / 2e-18 AT5G19090 118 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10028529 [exp] 82 / 1e-17 AT1G23000 81 / 4e-17 Heavy metal transport/detoxification superfamily protein (.1) Lus10009116 [exp] 81 / 1e-16 AT2G02000 248 / 3e-75 glutamate decarboxylase 3 (.1) Lus10028426 [exp] 70 / 2e-14 AT4G38580 228 / 4e-78 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G114300 [exp] 153 / 4e-43 AT1G23000 128 / 2e-33 Heavy metal transport/detoxification superfamily protein (.1) Potri.008G128400 [exp] 146 / 9e-41 AT1G23000 137 / 1e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.008G202800 [exp] 115 / 2e-28 AT3G06130 150 / 6e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.014G132000 [exp] 109 / 1e-27 AT5G27690 114 / 4e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.002G206900 [exp] 108 / 2e-27 AT5G27690 111 / 3e-28 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G024700 [exp] 107 / 4e-27 AT5G27690 114 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G091700 [exp] 97 / 3e-23 AT1G23000 99 / 1e-23 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G026100 [exp] 91 / 1e-20 AT5G27690 100 / 3e-24 Heavy metal transport/detoxification superfamily protein (.1) Potri.013G017700 [exp] 91 / 2e-20 AT5G27690 115 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G036300 [exp] 83 / 2e-17 AT3G06130 114 / 7e-28 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10032445 pacid=23146301 polypeptide=Lus10032445 locus=Lus10032445.g ID=Lus10032445.BGIv1.0 annot-version=v1.0 ATGAGTAAAGAAGAAAACTTTAAGCTTCTCAAGATCCAGACTTGCGTGCTGAGAGTGAGCATACATTGCGATGGCTGTAAGCAGAAAGTCAGGAAACTAC TTCAGAGGATTGAAGGGGTTTTCCAAGTAAGCATAGATGGAGAGCAGCAGAAAGTGACAGTGTCAGGAAGTGTGGATGCATCAACTTTGATCAAGAAGCT AGCCAGAGCTGGGAAATATGCTGAGCTTTGGCCTCAAAACTCCAATCAGAAGCAGAAGAACACCACCAACATCAACAATAGCAATGGCAGCAAATGCCTC AAAGATGACAAGAGCAGAAGTTCAAATGAAGGAGGCCAGATGAAGAATAATGGACTTAAGTCAGCTATGAAGAAAAACCATCAGATTGATGAAATTGATG AGGAAGATGAGCTTGGAGTGCTGAGGGCAAACCAAATTGGGCTTATAAGGCAACAACAGGCACTTGAGGCTCAGAGAAACAGCTGCATTGCTGCAATTGC TGCTGCAAACAAGAATAGGGAGCAGCAGAACAATGCTGCTGCCGCTGGTAAAGGGAAGAATAGAAGCCCTAATCAAGAGGCGAACGATAATGACATTGGA AACATGATGAGACTTGCTGGTTTCCCTACTGGAGATGCTGCTGCTTTTAGAGGAGGGCAAATAGGAGGGAGTGGTTATCAAGTTCAGCCAAACAATGGCG GGTTTATAACAGGTGGTCAGTATCCAAATGGGAATATGATGATGATGAACATGAACATGAACAATCAACCAGCAGTGATGAACTTCCAGCAGCATCAACC TCCTCAGCTCATGATGTATCAACCAACCAACAACACCGGCTATTATTACCAGCAGCAGTACAGCAATTACCCATGTTACAATACTAGTACTGAGCCAGAG CCAATTTACTACGGTGGTCATCATCATGGATTGAGTGAGGAGGAGAGCACATCAAGCAGCTGCTCCATTATGTAA
AA sequence Show only first row Show all	>Lus10032445 pacid=23146301 polypeptide=Lus10032445 locus=Lus10032445.g ID=Lus10032445.BGIv1.0 annot-version=v1.0 MSKEENFKLLKIQTCVLRVSIHCDGCKQKVRKLLQRIEGVFQVSIDGEQQKVTVSGSVDASTLIKKLARAGKYAELWPQNSNQKQKNTTNINNSNGSKCL KDDKSRSSNEGGQMKNNGLKSAMKKNHQIDEIDEEDELGVLRANQIGLIRQQQALEAQRNSCIAAIAAANKNREQQNNAAAAGKGKNRSPNQEANDNDIG NMMRLAGFPTGDAAAFRGGQIGGSGYQVQPNNGGFITGGQYPNGNMMMMNMNMNNQPAVMNFQQHQPPQLMMYQPTNNTGYYYQQQYSNYPCYNTSTEPE PIYYGGHHHGLSEEESTSSSCSIM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23000			Heavy metal transport/detoxifi...		Lus10032445 [exp]	0	1
					Lus10011220 [exp]	1.0	0.9684
AT3G20260			Protein of unknown function (D...		Lus10034809 [exp]	1.7	0.9522
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10030108 [exp]	2.0	0.9442
AT5G59970			Histone superfamily protein (....		Lus10028464 [exp]	2.4	0.9560
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10002526 [exp]	4.7	0.9343
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10020663 [exp]	7.9	0.9358
					Lus10018463 [exp]	8.4	0.9233
AT5G61190	C2H2ZnF		putative endonuclease or glyco...		Lus10003476 [exp]	8.5	0.9322
AT3G53730			Histone superfamily protein (....		Lus10004949 [exp]	10.2	0.9088
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10034690 [exp]	13.0	0.9107

Compare expression of checked genes

Lus10032445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.