Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26618 808 / 0 ERF1-3 eukaryotic release factor 1-3 (.1) AT1G12920 789 / 0 ERF1-2 eukaryotic release factor 1-2 (.1) AT5G47880 763 / 0 ERF1-1 eukaryotic release factor 1-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042947 [exp] 853 / 0 AT3G26618 839 / 0.0 eukaryotic release factor 1-3 (.1) Lus10014295 [exp] 776 / 0 AT1G12920 811 / 0.0 eukaryotic release factor 1-2 (.1) Lus10026003 [exp] 775 / 0 AT1G12920 808 / 0.0 eukaryotic release factor 1-2 (.1) Lus10038236 [exp] 773 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10025863 [exp] 773 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10028312 [exp] 769 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10041760 [exp] 754 / 0 AT1G12920 783 / 0.0 eukaryotic release factor 1-2 (.1) Lus10031479 [exp] 186 / 2e-55 AT5G47880 192 / 4e-58 eukaryotic release factor 1-1 (.1.2) Lus10028313 [exp] 166 / 1e-49 AT1G12920 171 / 2e-52 eukaryotic release factor 1-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G141000 [exp] 816 / 0 AT3G26618 841 / 0.0 eukaryotic release factor 1-3 (.1) Potri.003G159000 [exp] 805 / 0 AT3G26618 785 / 0.0 eukaryotic release factor 1-3 (.1) Potri.001G072000 [exp] 802 / 0 AT3G26618 793 / 0.0 eukaryotic release factor 1-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF03463 [flax] [poplar] eRF1_1 eRF1 domain 1 CL0101 [flax] [poplar] PELOTA PF03465 [flax] [poplar] eRF1_3 eRF1 domain 3 CL0267 [flax] [poplar] S11_L18p PF03464 [flax] [poplar] eRF1_2 eRF1 domain 2
Representative CDS sequence Show only first row Show all	>Lus10032447 pacid=23146325 polypeptide=Lus10032447 locus=Lus10032447.g ID=Lus10032447.BGIv1.0 annot-version=v1.0 ATGGCAGATCAGGAATCAGACAAGAACATTGAGATATGGAAAATCAAAAAGTTGATCAAGGCATTGGAAGCCGCAAGGGGAAATGGTACAAGCATGATAT CCCTTATAATGCCTCCTCGTGATCAGATATCTCGTGTTACTAAAATGTTGGGAGATGAGTTTGGGACAGCTTCAAACATCAAAAGTAGGGTTAATCGTCA ATCTGTGCTGGGGGCTATCACATCTGCTCAACAAAGGCTGAAGCTCTACAATAAGGTGCCACCCAATGGTTTGGTACTTTACACCGGCACTATTGTTACA GATGATGGGAAGGAAAAGAAGGTGACAATCGATTTTGAGCCTTTTAAGCCTATCAATGCATCTTTATACTTGTGTGACAACAAGTTCCACACAGAAGCTT TGAACGAACTCTTGGAATCTGATGATAAGTTTGGTTTCATAGTCATGGATGGAAATGGTACTCTGTTCGGAACGTTGAGTGGCAATACGCGAGAGGTGCT GCATAAATTTTCTGTTGATTTGCCGAAAAAGCACGGAAGAGGTGGGCAGTCTGCTCTTCGTTTCGCTCGTCTTCGGATGGAAAAGAGACATAACTACGTC AGGAAGACTGCTGAGCTTGCTACACAGTTCTACATCAATCCTGCTACCAGTCAGCCAAATGTTTCAGGTCTTATTCTGGCTGGTTCGGCCGATTTCAAGA CCGAGCTTAGCCAGTCAGATATGTTCGATCCTCGCTTGCAGGCCAAGATACTGAACGTGGTTGATGTATCGTATGGAGGTGAAAATGGGTTTAACCAGGC GATTGAGCTGTCGGCTGAGATACTATCAAACGTGAAGTTCATACAAGAAAAAAAATTGATAGGAAAATACTTCGAGGAGATCAGCCAGGACACTGGAAAG TATGTGTTTGGAGTTGAGGACACGCTGAAGGCTTTGGAAATGGGTGCTGTGGAGACTCTCATTGTGTGGGAAAATCTCGATATCAATCGTTATGTCTTGA AAAACAGTGTTAATGGTGAGACGGTGATAAAGCACTTGAACAAGGACCAAGAAGGTGACCAGGGTAACTTCAGAGATGCTGCTACCTCTGGGGAGCTGGA AGTTCAGGAGAAGCTGCCATTACTCGAGTGGTTTGCAAATGAGTACAAGAAGTTTGGCTGCACGTTGGAATTTGTCACCAACAAGTCCCAAGAGGGGTCG CAGTTTTGTAGAGGGTTTGGTGGGATTGGAGGTATTCTTCGTTATCAACTGGACATGAGAACTTTTGATGAGCTGTCTGATGATGGAGAAGTTTATGACG ACTCTGATTAG
AA sequence Show only first row Show all	>Lus10032447 pacid=23146325 polypeptide=Lus10032447 locus=Lus10032447.g ID=Lus10032447.BGIv1.0 annot-version=v1.0 MADQESDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVT DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYV RKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKKLIGKYFEEISQDTGK YVFGVEDTLKALEMGAVETLIVWENLDINRYVLKNSVNGETVIKHLNKDQEGDQGNFRDAATSGELEVQEKLPLLEWFANEYKKFGCTLEFVTNKSQEGS QFCRGFGGIGGILRYQLDMRTFDELSDDGEVYDDSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Lus10032447 [exp]	0	1
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10000113 [exp]	1.7	0.8568
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10016943 [exp]	6.0	0.8322
AT5G60670			Ribosomal protein L11 family p...		Lus10026506 [exp]	7.3	0.8354
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Lus10042947 [exp]	8.4	0.8459
AT5G60670			Ribosomal protein L11 family p...		Lus10015085 [exp]	8.4	0.8213
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Lus10006769 [exp]	8.9	0.8054
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10037152 [exp]	11.5	0.7333
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011770 [exp]	13.0	0.8128
AT1G62730			Terpenoid synthases superfamil...		Lus10024610 [exp]	14.9	0.7954
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10016417 [exp]	15.9	0.7983

Compare expression of checked genes

Lus10032447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.