Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71080 228 / 2e-72 RNA polymerase II transcription elongation factor (.1) AT5G38050 156 / 2e-45 RNA polymerase II transcription elongation factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042948 [exp] 452 / 3e-160 AT1G71080 281 / 7e-93 RNA polymerase II transcription elongation factor (.1) Lus10004071 [exp] 178 / 1e-55 AT1G71080 177 / 9e-56 RNA polymerase II transcription elongation factor (.1) Lus10009106 [exp] 177 / 4e-53 AT5G38050 196 / 4e-61 RNA polymerase II transcription elongation factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G114900 [exp] 262 / 4e-86 AT1G71080 286 / 1e-95 RNA polymerase II transcription elongation factor (.1) Potri.008G127900 [exp] 251 / 7e-82 AT1G71080 285 / 1e-95 RNA polymerase II transcription elongation factor (.1) Potri.004G092200 [exp] 194 / 1e-59 AT1G71080 194 / 2e-59 RNA polymerase II transcription elongation factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09816 [flax] [poplar] EAF RNA polymerase II transcription elongation factor
Representative CDS sequence Show only first row Show all	>Lus10032448 pacid=23146222 polypeptide=Lus10032448 locus=Lus10032448.g ID=Lus10032448.BGIv1.0 annot-version=v1.0 ATGGCGAACAACGTCAAGGAAGAGCCCAAGACCGCACCCCAGCCCGATCGCTGGTACGATCTCACCGTCGGATCTTCATTCAAAGAAGACGCTTCCAACA AGTTCCGTACTCTGCGATATGAATTCAAGCCGGCCTCAATTGACAAGTCAAAGCCAGGCTCGTTGCACAAGAACAAGGAAAATCGAGTGTCTGTGGAGTT TCATAACAATCAACCTGGGAAACCCAAAGTTACATTTGAAGGAAGCAGCGAGGATTACAAAGAAAACGACGCCGTGTTGTTCTTTGACGGCCACACATTT CGACTGGAGAAACTTCATAGAGCTGTCAACAAGCTCCGTCACCTTAGACAGCCCGGCGAGTCTTCTGCTGCTGTAGCTGCTGCTGTTGCCGCTGCCGTCG CACAATCTGGGGATCCTCGTTTGTCTCCTCCCGTTGCGAAGGGTGCCAAATCAGCTCAACTTGGGAAGCCTATATCATTTCCTTCTATTCCCGTTGAGGT GGAGCGAATTGATGTCGAAAAGCCACCAATTCCAGCGCATAGAATTGCTGGGAAGGGGTTCAACGATATTCAGACTGAGCCACCGAAAGTTCCAGCTCCA TTAAGCCCCAACGATGACGGCGAAGACAAAGAACACCATGACATAGATATCGAAGACATTTTTGGTTCCATTTCCCCTGCTGATGAAGGCACGCCATCAG AAAACAAAGATATCGATATGATCCATGACAATGATACTCAACAACGTCAGAATGACTCGGATGACGAGATTGCCGACGTGGATGATGATAGCGGCGATGA CGAACATAAAGGCAGAAATGCGGCGGAAGCACTTAAAGCGCAGGTCAACAATGGCGACGAAGGTCACAATGACAAGTCAAAGGAGGGTGATGATCAGTCT TCTAGTTCTGGAAGCAGCAGTAGCGGAAGCAGCAGTAGTGGGAGTGCAAGTGGAAGCGGAAGCAATAGCAGCAGCGACAATGAAGGGAGCGATGACTCTG TCAACTCCATTTGA
AA sequence Show only first row Show all	>Lus10032448 pacid=23146222 polypeptide=Lus10032448 locus=Lus10032448.g ID=Lus10032448.BGIv1.0 annot-version=v1.0 MANNVKEEPKTAPQPDRWYDLTVGSSFKEDASNKFRTLRYEFKPASIDKSKPGSLHKNKENRVSVEFHNNQPGKPKVTFEGSSEDYKENDAVLFFDGHTF RLEKLHRAVNKLRHLRQPGESSAAVAAAVAAAVAQSGDPRLSPPVAKGAKSAQLGKPISFPSIPVEVERIDVEKPPIPAHRIAGKGFNDIQTEPPKVPAP LSPNDDGEDKEHHDIDIEDIFGSISPADEGTPSENKDIDMIHDNDTQQRQNDSDDEIADVDDDSGDDEHKGRNAAEALKAQVNNGDEGHNDKSKEGDDQS SSSGSSSSGSSSSGSASGSGSNSSSDNEGSDDSVNSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71080			RNA polymerase II transcriptio...		Lus10032448 [exp]	0	1
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Lus10012753 [exp]	2.4	0.7477
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10042713 [exp]	19.8	0.7040
AT5G49210			unknown protein		Lus10043148 [exp]	23.2	0.6477
AT1G44820			Peptidase M20/M25/M40 family p...		Lus10042502 [exp]	26.3	0.6695
AT3G27030			unknown protein		Lus10041550 [exp]	26.5	0.6848
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012399 [exp]	39.5	0.6607
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Lus10006738 [exp]	40.5	0.6658
AT4G04780		MED21	mediator 21 (.1)		Lus10008009 [exp]	45.2	0.6808
AT2G32280			Protein of unknown function (D...		Lus10038567 [exp]	47.6	0.6359
AT5G02510			unknown protein		Lus10025332 [exp]	47.7	0.6748

Compare expression of checked genes

Lus10032448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.