Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01320 1022 / 0 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT3G25620 281 / 4e-84 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT3G21090 279 / 3e-83 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G31770 268 / 1e-79 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT1G51500 268 / 3e-79 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT5G06530 263 / 8e-77 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT1G51460 254 / 5e-74 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT4G27420 253 / 5e-74 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT3G52310 254 / 5e-73 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT1G71960 246 / 4e-71 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042949 [exp] 1329 / 0 AT2G01320 1062 / 0.0 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) Lus10035692 [exp] 291 / 5e-88 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10037283 [exp] 285 / 1e-85 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034775 [exp] 275 / 1e-81 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10027354 [exp] 273 / 1e-80 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10033314 [exp] 268 / 5e-80 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10009959 [exp] 266 / 3e-78 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10025596 [exp] 258 / 9e-76 AT4G27420 687 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10029635 [exp] 249 / 7e-73 AT4G27420 698 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G115000 [exp] 1085 / 0 AT2G01320 1047 / 0.0 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) Potri.004G236500 [exp] 276 / 2e-82 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.009G051300 [exp] 273 / 8e-81 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.013G111900 [exp] 271 / 2e-80 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.009G051200 [exp] 268 / 7e-79 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.003G046800 [exp] 266 / 2e-78 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.019G083000 [exp] 265 / 3e-78 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.016G065900 [exp] 264 / 3e-77 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.010G131900 [exp] 261 / 1e-76 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.001G404000 [exp] 259 / 2e-76 AT4G27420 690 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10032449 pacid=23146261 polypeptide=Lus10032449 locus=Lus10032449.g ID=Lus10032449.BGIv1.0 annot-version=v1.0 ATGGCAGGGCAAGTGCTGCGTTTCGGCGGGAATGGGCTCGGCCAGATTGTCACTGCAGCGGCCGTGGCTCTCCTGTTCCGGTTGTTTTCTGGACCTGGCC CTGCTCTTTCACCTGATTCGGAGTTCGATACCGATGATATAGAGATAAATGAAGGCGACAGCGACGACGACGATGAAAGCGGCGGCCATGCTCCAGCTAA CGGCAAGGTCGTTCCGGTTACTATACGCTGGCGCAATATCAACTGTTCCCTCCTTGACAAGCGCTCCGAATTCGTAAGGTTTCTGCTGAATAATGTTAGC GGAGAGGCCGAGCCTGGAAGATTGCTTGCAATAATGGGACCATCTGGTTCTGGAAAAACGACGCTGCTCAATGTTTTGGCTGGACAACTGATGGAATTCC CGCGTTTGAGTTTATCTGGGCGTTTGGAGATTAATGGGAAGCCATTCTCAAACCGAGCTTATAAGCTCGCTTATGTGAGGCAGGAGGATCTCTTCTTTTC TCAGCTAACAGTTAGGGAGACACTTTCTCTTGCCGCAGAGCTTCAACTTCCTCATATATCTTCTGTAGAAGAAAGAGATGAATACGTCAACAGTTTGTTG TTCAAGCTTGGTTTGGTTAATTGTGCTGATTCAATTGTTGGAGATGCAAAAGTTCGTGGGATAAGTGGTGGTGAAAAGAAGCGTTTATCAGTCGCCTGTG AACTTATAGCAAGCCCTTCTGTCGTATTTGCTGATGAACCCACTACAGGTCTGGATGCATTCCAGGCAGAGAAAGTTATGGAAACTCTACGCCAGTTGGC TCAGGATGGACACACAGTAATTTGCTCCATACACCAACCTAGGGGTTCGGTGTACAATAAATTTGACGACATCATGTTGCTGTCAGAGGGTGCCTTAGTT TATGCTGGCCCTGCCGGTGATCAGCCATTGACATATCTTTCAAAGTTCGGGTTTAAATGTCCAGAACATGTCAATCCTGCAGAATTTTTGGCCGATCTCG TTTCAGTTGATTACAGCTCTGCTGAAAGTGTGTCCACTTCTCGGAAAAGGATAGATGGTCTCGTTGAGTCATTTGCAGAGCAGTCATCCTTGATCCTGTA TGCAACTCCACTTAATAAAAGCATTGGGATGGTGAATGAGAGGAAATTGAAAAAAAGAATTGCTGTGAAAGGAAAAGGGAATTGGTGGAAACAATTTCAG TTACTTCTTAGACGTGCATGGATGCAGGCTTCACGTGATGGTCCTACAAACAAAGTACGTTCAAGAATGTCTATCGCGTCAGCTATCATATTTGGATCAG TTTTTTGGAAAATTGGTAGATCCCAGACATCAATACAAGATCGGATGGGATTGCTTCAGGGATTTCATTACATTATATATTACTTTGAGGTTGCGGCCAT AAACACAGCCATGGCAGCTCTCACCAAAACTGTGGGTGTGTTCCCCAAGGAACGAGCTATAGTCGACAGGGAGCGTGCTAAAGGATCTTATGCTTTGGGA CCTTATTTGCTCTCTAAATTGATTGCCGAGATTCCAGTTAGTGCAGCATTTCCTCTGATGTTTGGTGCTGTACTTTATCCCATGTCCGGTTTGCATCCAA CTCTGTCTAGGTCTGCTCTCTTTTCTTCGTTTCTCCTATATTTCACATGCAATTTTGATATTTCACTCAGCAAACAAGAGAACGGAGTAGAGCTTAATCC AAAGCTTGTGAAATATAGGTTCGGGAAGTTCTGCGGAATAGTGACGGCAGAATCATTTGCTGCATCTGCAATGGGTCTAACTGTGGGAGCCATGGTTCCA ACCAGTGAAGCAGCAATGGCTGTGGGGCCGTCTCTCATGACGGTTTTCATAGTCTTTGGTGGCTATTATGTGAATGCAGACAATACACCAATTATATTCC GGTGGATTCCTCGTGCATCATTGATAAGATGGGCCTTCCAAGGGCTTTGTATCAATGAATTCAGAGGTCTTCGCTTCGACCAACAAAACTCATTCGATAT TGAAACAGGCGAGCAGGCTCTGGATCGTCTATCATTTGGAGGAAGTGGCATCAGCGATACAGTGATGGCACAGAGCAGAATTCTATTGTTTTGGTATTGC ACTACCTACTTTCTGTTGCAGAAAAATAAACCCAAATACCAGCGGCTGGAGCGAGTGGCTTCATCAGAACAAACTAAAAAAACACAGCTGGAGCTGGAGC CACTAGAGCCTGACCAAATTAAACAGCTAAATCAGGAACCGGATCAAACTCCGGCTAGTAAAGAGGAACCGGCTCAGCCGGTTCCGTTGGAGTTTGACCA AATCCAACCGTTTGTCTTGGAAGGTTTGTAA
AA sequence Show only first row Show all	>Lus10032449 pacid=23146261 polypeptide=Lus10032449 locus=Lus10032449.g ID=Lus10032449.BGIv1.0 annot-version=v1.0 MAGQVLRFGGNGLGQIVTAAAVALLFRLFSGPGPALSPDSEFDTDDIEINEGDSDDDDESGGHAPANGKVVPVTIRWRNINCSLLDKRSEFVRFLLNNVS GEAEPGRLLAIMGPSGSGKTTLLNVLAGQLMEFPRLSLSGRLEINGKPFSNRAYKLAYVRQEDLFFSQLTVRETLSLAAELQLPHISSVEERDEYVNSLL FKLGLVNCADSIVGDAKVRGISGGEKKRLSVACELIASPSVVFADEPTTGLDAFQAEKVMETLRQLAQDGHTVICSIHQPRGSVYNKFDDIMLLSEGALV YAGPAGDQPLTYLSKFGFKCPEHVNPAEFLADLVSVDYSSAESVSTSRKRIDGLVESFAEQSSLILYATPLNKSIGMVNERKLKKRIAVKGKGNWWKQFQ LLLRRAWMQASRDGPTNKVRSRMSIASAIIFGSVFWKIGRSQTSIQDRMGLLQGFHYIIYYFEVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALG PYLLSKLIAEIPVSAAFPLMFGAVLYPMSGLHPTLSRSALFSSFLLYFTCNFDISLSKQENGVELNPKLVKYRFGKFCGIVTAESFAASAMGLTVGAMVP TSEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRASLIRWAFQGLCINEFRGLRFDQQNSFDIETGEQALDRLSFGGSGISDTVMAQSRILLFWYC TTYFLLQKNKPKYQRLERVASSEQTKKTQLELEPLEPDQIKQLNQEPDQTPASKEEPAQPVPLEFDQIQPFVLEGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10032449 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10018616 [exp]	1.4	0.9187
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10019033 [exp]	6.6	0.9196
AT5G66550			Maf-like protein (.1)		Lus10040470 [exp]	9.2	0.9114
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031565 [exp]	9.2	0.9100
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10032665 [exp]	11.0	0.9119
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10021346 [exp]	11.5	0.9122
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10000862 [exp]	12.6	0.9122
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10017023 [exp]	13.3	0.9072
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Lus10043375 [exp]	14.1	0.8466
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10038400 [exp]	17.0	0.9041

Compare expression of checked genes

Lus10032449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.