Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18260 268 / 1e-91 Reticulon family protein (.1) AT2G46170 194 / 3e-62 Reticulon family protein (.1.2) AT4G11220 188 / 2e-59 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT4G23630 181 / 1e-56 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT1G64090 180 / 1e-56 RTNLB3 Reticulan like protein B3 (.1.2) AT3G61560 177 / 2e-55 Reticulon family protein (.1.2) AT3G10260 172 / 2e-53 Reticulon family protein (.1.2.3) AT5G41600 162 / 2e-49 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT3G10915 149 / 5e-45 Reticulon family protein (.1.2.3.4.5.6) AT4G01230 142 / 6e-42 Reticulon family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038833 [exp] 200 / 2e-64 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) Lus10014948 [exp] 196 / 6e-63 AT4G23630 306 / 3e-105 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10027548 [exp] 196 / 8e-63 AT1G64090 316 / 2e-109 Reticulan like protein B3 (.1.2) Lus10027546 [exp] 192 / 2e-61 AT4G11220 307 / 5e-106 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Lus10036405 [exp] 180 / 2e-56 AT2G46170 320 / 8e-111 Reticulon family protein (.1.2) Lus10039307 [exp] 180 / 2e-56 AT1G64090 307 / 4e-106 Reticulan like protein B3 (.1.2) Lus10041080 [exp] 179 / 4e-56 AT2G46170 320 / 5e-111 Reticulon family protein (.1.2) Lus10029822 [exp] 172 / 1e-53 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3) Lus10020718 [exp] 171 / 5e-53 AT3G10260 325 / 2e-113 Reticulon family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G054100 [exp] 287 / 3e-99 AT3G18260 238 / 6e-80 Reticulon family protein (.1) Potri.015G044300 [exp] 279 / 5e-96 AT3G18260 251 / 1e-84 Reticulon family protein (.1) Potri.001G097700 [exp] 198 / 1e-63 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.015G027300 [exp] 197 / 4e-63 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.012G035600 [exp] 194 / 1e-61 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.005G206800 [exp] 188 / 1e-59 AT3G10260 315 / 3e-109 Reticulon family protein (.1.2.3) Potri.014G091200 [exp] 184 / 4e-58 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.003G133600 [exp] 184 / 4e-58 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.002G055600 [exp] 182 / 2e-57 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3) Potri.002G165400 [exp] 171 / 6e-53 AT2G46170 311 / 1e-107 Reticulon family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10032451 pacid=23146343 polypeptide=Lus10032451 locus=Lus10032451.g ID=Lus10032451.BGIv1.0 annot-version=v1.0 ATGCCAAGGTACAATTCGGAATCTGAGGACGAAATGGCGACAGTCCCCGCCAAGCTGTTCCGCGGCCGGCAGAGGCCAATGCATGCTTTACTCGGAGGAG GCAAAGTTGCGGATGTGTTGTTGTGGAAGAAGAGGAACCTGTCGGGGGGACTAATGATTGGTGCGACATTGATATGGCTGCTGTTTGAAGTGGCGGAATA CAATTTGGTCACTTTGATCTCTCACATTTCAATCACATCAATGCTCCTTTTCTTCATTTGGAGTACTGCTGCCGACTTCCTCAACTGGAAGCCGCCGCAG ATTCCAGAAATAGTGTTGCAGGAACATACATTCAGGGAAGCTGCATCTGTATTCCACAAAAGGTTCAATTATGCCCTAGCGATTTTCCTCGACGTCGCTT GCGGAAGAAATCCTCGTCTCTTCTTTCTCGCAATCATTTGCCTTTACGCAGTATCAGTGATTGGCAACTACTTCAGCTTCCTCAATTTCCTTTATCTGGG GTATGTGGCATTGCAAACGGTGCCGTTTCTGTACGAGAGATACGAGGAGGAGGTAGACTATTTTGCAGGAACGTTGATGAGAGACATGAGGAGGGCTTAC AAGAAATTCGATTCAAGGGTTCTCAACAAGATACCAAGAGGTCCCGTCAAGGACAAGAAGACCCGTTAA
AA sequence Show only first row Show all	>Lus10032451 pacid=23146343 polypeptide=Lus10032451 locus=Lus10032451.g ID=Lus10032451.BGIv1.0 annot-version=v1.0 MPRYNSESEDEMATVPAKLFRGRQRPMHALLGGGKVADVLLWKKRNLSGGLMIGATLIWLLFEVAEYNLVTLISHISITSMLLFFIWSTAADFLNWKPPQ IPEIVLQEHTFREAASVFHKRFNYALAIFLDVACGRNPRLFFLAIICLYAVSVIGNYFSFLNFLYLGYVALQTVPFLYERYEEEVDYFAGTLMRDMRRAY KKFDSRVLNKIPRGPVKDKKTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18260			Reticulon family protein (.1)		Lus10032451 [exp]	0	1
AT2G42820		HVA22F	HVA22-like protein F (.1)		Lus10031386 [exp]	1.0	0.9916
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009316 [exp]	2.0	0.9854
AT1G54400			HSP20-like chaperones superfam...		Lus10032902 [exp]	2.2	0.9778
AT2G42820		HVA22F	HVA22-like protein F (.1)		Lus10010944 [exp]	2.4	0.9803
AT1G13920			Remorin family protein (.1)		Lus10037111 [exp]	3.5	0.9782
AT1G13920			Remorin family protein (.1)		Lus10026649 [exp]	4.6	0.9703
AT1G76770			HSP20-like chaperones superfam...		Lus10028577 [exp]	4.9	0.9637
AT1G76770			HSP20-like chaperones superfam...		Lus10018882 [exp]	5.1	0.9501
AT1G13920			Remorin family protein (.1)		Lus10004665 [exp]	6.9	0.9762
AT5G18970			AWPM-19-like family protein (....		Lus10041238 [exp]	7.9	0.9620

Compare expression of checked genes

Lus10032451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.