Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18370 1452 / 0 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT3G43210 1018 / 0 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) AT5G66310 481 / 2e-153 ATP binding microtubule motor family protein (.1) AT4G38950 468 / 3e-151 ATP binding microtubule motor family protein (.1.2) AT4G24170 467 / 8e-149 ATP binding microtubule motor family protein (.1) AT2G21300 462 / 2e-148 ATP binding microtubule motor family protein (.1.2) AT3G51150 463 / 9e-147 ATP binding microtubule motor family protein (.1.2) AT5G42490 315 / 7e-92 ATP binding microtubule motor family protein (.1) AT3G12020 293 / 1e-84 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G06670 283 / 7e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042952 [exp] 1573 / 0 AT1G18370 1206 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Lus10005181 [exp] 1020 / 0 AT3G43210 1189 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Lus10031086 [exp] 469 / 1e-150 AT2G21300 1026 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10035471 [exp] 465 / 5e-149 AT2G21300 1011 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10015448 [exp] 447 / 2e-147 AT3G51150 558 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10014268 [exp] 464 / 9e-147 AT5G66310 667 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025969 [exp] 461 / 3e-145 AT3G51150 694 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10033920 [exp] 456 / 6e-145 AT3G51150 578 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10010624 [exp] 450 / 9e-143 AT3G51150 577 / 0.0 ATP binding microtubule motor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G054400 [exp] 1551 / 0 AT1G18370 1466 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.015G044600 [exp] 1512 / 0 AT1G18370 1518 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.006G136600 [exp] 1117 / 0 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.002G027600 [exp] 474 / 2e-152 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.007G014800 [exp] 473 / 3e-151 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1) Potri.004G162800 [exp] 468 / 1e-149 AT2G21300 1031 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.005G116900 [exp] 463 / 4e-147 AT3G51150 668 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.009G124500 [exp] 462 / 5e-147 AT2G21300 752 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.014G013300 [exp] 286 / 4e-83 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G194900 [exp] 286 / 9e-82 AT3G12020 1278 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0023 [flax] [poplar] PF11995 [flax] [poplar] DUF3490 Domain of unknown function (DUF3490)
Representative CDS sequence Show only first row Show all	>Lus10032452 pacid=23146233 polypeptide=Lus10032452 locus=Lus10032452.g ID=Lus10032452.BGIv1.0 annot-version=v1.0 ATGACTGCGAAAACCCCTGGAACGCCGGCTTCAAAGATTGAAAACAGAACACCAGCATCAACTCCCGGAGGAGGGAGCAAGGGGAAAGATGAGAAGATTG TAGTTACGGTACGTTTGCGGCCTTTGAACAGAAGGGAGCAGCTAGCTAAGGATCAAGTAGCGTGGGAGTGTTTGGATGATTACACCATTGCTTACAAGCC GCTACCCCAGGAGCGCTCTGCTCAACCATCCTCTTTCACTTTTGATAAAGTGTTTGGCCCATCTTGTGTAACTGAGTCGGTTTATGAGGATGGAGTAAAG AACATTGCTCTCTCTGCTCTTATGGGAATAAATGCAACTATCTTTGCTTATGGGCAAACCAGCAGCGGGAAGACATACACGATGAGAGGAATAACTGAAA AAGCTGTCCAAGACATCTATAACCATATAAGAAATACTCCAGAGAGAGACTTTACAATCAGGATATCAGGACTTGAGATATATAACGAAAATGTCAGGGA TTTGTTGAATTCGGAATCTGGTCGTAGCCTCAAGCTTCTTGATGATCCGGAGAAAGGTACCGTGGTTGAGAAACTTGTAGAGGAAACAGCAAGCAACGAC TCACACTTGCGGAAGTTAATTAGTATATGTGAAGCCCAGAGGCAGGTTGGGGAAACTGCACTCAATGATACTAGTTCACGATCTCATCAGATAATACGAT TGACAATACAAAGTACTCTAAATGAGACTTCAGATTGTGCGAGGTCTTTTGTTGCAAGCTTGAATTTCGTTGATCTCGCTGGGAGTGAGAGGGCTTCACA GACGCATACCGATGGTGCTAGGCTACGAGAAGGTTGCCATATCAATCTTAGCCTGATGACTCTGACTACAGTAATCAGAAAGCTCAGTGTTGGGAAAAGA AGTGGTCACATACCGTACAGAGACTCCAAGCTTACACGGATACTGCAGCATTCACTAGGTGGAAATGCTCGTACTGCCATTATCTGTACTTTAAGCCCGG CATTGACACATGTTGAACAATCTCGGAATACACTTTATTTCGCAACACGAGCCAAGGAAGTTACAAACAGTGCCAAAGTTAACATGGTTATTTCGGACAA GCAGCTAGTGAAGCATTTACAGAAGGAAGTAGCGAGGCTGGAAGCAGAACGGCGCACTCCTGACCCTTCATCCGAAAAAGACTGGAAAATACAGCAGCTG GAGATGGAAATAGAAGAACTGAGGCGCCAAAGGGACCTTGCGAAGTGTGAGGTGGACGAGTTACGCAAGAAACTCCAAGATGAAAAACTTGAAGATGGAA AGATATCCAGCAAAGTAGAATCACCCCGCCCATCCGTGAAGAAGTGTCTGTCGTACTCAGCAGCATTGATGTCGAAACCTGAGAGCAAGGACTTAATTCG CAGTGAGAAGATGACAAAAGCAGCACTATGGCAGTCCATGAGACTATCATCAGCTGCACCTTTCACACTGATGCATGAAATTCGCAAACTCGAACACCTT CAGGATCAACTTGGGGAAGAAGCTAATCGGGCTCTGGAAGTATTGCAGAAAGAGGTTGCTTGTCACAGGCTAGGTAATCAAGATGCAGCCGAAACAATCG CTAAGCTTCAAGCTGAAATAAGGGAAATGCGCTCAGCTCCGCTACCAAGGGAAGTTGCAATTGGAAGTAACAAGAGTGTCAGTGCTAATCTGAAGGAAGA AATAACGAGACTTCATTCGCAAGGAAGCAACATCGCAAATCTCGAAGAGCAACTAGAGAACGTCCAGAAGTCGATTGACAAGCTGATCATGTCACTTCCA AGTAACAATTCAGATGAGTCAGCAGCTTCTAATCCTAAGAACCAGTACAGGAAGAAAAAGACTAATCCTTTATGTTCAAGCAATGGCGCAAACATGCAGA ACTTCATTAGATCTCCTTGTTCGCCTTTGTCATCATCGAGGCAAGTACTGGAGAACGAGACAGAAAATAGAGCACCAGAGAGCGATGAAGTTGCGTCCAA AGCGTCCGAGAAACAACAACCGACTCCAATGAAGAGTGAGGAAGGTGGAGATGCGTCGTCAAAGGAAGGGACGCCTGGTTCCCGACGTACAAGCTCAGTC AACATGAAGAAAATGCAGAAGATGTTCCAGAATGCAGCGGAGGAAAACGTGAGAAGCATTCGAAACTATGTAACAGAACTGAAGGAACGCGTTGCGAAAC TCCAATATCAAAAGCAGCTGTTAGTCTGCCAGGTACTGGAACTGGAAGCAAATGAAGCCGCTGGGTATAACGTGGAGGACGAGGAGGAAGCAGCAATCGG ACCGGTAGAACCACAGGTTCCATGGCATGTGACCTTCAGGGAACAAAGGCAGCAGATCATAGAATTATGGGACGTTTGTTTTGTACCAATCATCCACAGA ACACAATTCTATCTTCTGTTCAAAGGAGACCCTGCTGATGAGATATACATGGAGGTGGAACTCAGAAGACTAACATGGCTGCAGCAGCATCTGGCTGAGG TTGGGGATGCAAGCCCTGCTCGTGGTGGTACCGGAGGAGATGAACCTACAGTTTCCCTTTCGTCAAGTTTGAGAGCGCTGAAACGCGAAAGGGAGTTCCT GGCGAAGAGGCTGGGTCGGCTGAGCATGGAGGAGAGGGAAGCGATGTTCATGAAGTGGAATGTACCACTGGATGGGAAGCACAGAAGGCTACAGTTCATC AGCAAGCTGTGGACGAATCCTCATGATGGGAAGCACGTTGAGGAAAGTGCTGAGATCGTCGGGAGGCTAGTTGGGCTGTACCAAGGAGGGGTAGTATCGA AGGAGATGTTCGAGCTTAACTTCGCTCCACCGACGGATAAGAGAGCGTGGTGGGAATGGAACCCGATTTCCAACCTGCTCAACCTCTGA
AA sequence Show only first row Show all	>Lus10032452 pacid=23146233 polypeptide=Lus10032452 locus=Lus10032452.g ID=Lus10032452.BGIv1.0 annot-version=v1.0 MTAKTPGTPASKIENRTPASTPGGGSKGKDEKIVVTVRLRPLNRREQLAKDQVAWECLDDYTIAYKPLPQERSAQPSSFTFDKVFGPSCVTESVYEDGVK NIALSALMGINATIFAYGQTSSGKTYTMRGITEKAVQDIYNHIRNTPERDFTIRISGLEIYNENVRDLLNSESGRSLKLLDDPEKGTVVEKLVEETASND SHLRKLISICEAQRQVGETALNDTSSRSHQIIRLTIQSTLNETSDCARSFVASLNFVDLAGSERASQTHTDGARLREGCHINLSLMTLTTVIRKLSVGKR SGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALTHVEQSRNTLYFATRAKEVTNSAKVNMVISDKQLVKHLQKEVARLEAERRTPDPSSEKDWKIQQL EMEIEELRRQRDLAKCEVDELRKKLQDEKLEDGKISSKVESPRPSVKKCLSYSAALMSKPESKDLIRSEKMTKAALWQSMRLSSAAPFTLMHEIRKLEHL QDQLGEEANRALEVLQKEVACHRLGNQDAAETIAKLQAEIREMRSAPLPREVAIGSNKSVSANLKEEITRLHSQGSNIANLEEQLENVQKSIDKLIMSLP SNNSDESAASNPKNQYRKKKTNPLCSSNGANMQNFIRSPCSPLSSSRQVLENETENRAPESDEVASKASEKQQPTPMKSEEGGDASSKEGTPGSRRTSSV NMKKMQKMFQNAAEENVRSIRNYVTELKERVAKLQYQKQLLVCQVLELEANEAAGYNVEDEEEAAIGPVEPQVPWHVTFREQRQQIIELWDVCFVPIIHR TQFYLLFKGDPADEIYMEVELRRLTWLQQHLAEVGDASPARGGTGGDEPTVSLSSSLRALKREREFLAKRLGRLSMEEREAMFMKWNVPLDGKHRRLQFI SKLWTNPHDGKHVEESAEIVGRLVGLYQGGVVSKEMFELNFAPPTDKRAWWEWNPISNLLNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Lus10032452 [exp]	0	1
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Lus10042952 [exp]	1.0	0.9958
AT2G22610			Di-glucose binding protein wit...		Lus10025708 [exp]	2.4	0.9809
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10028433 [exp]	2.8	0.9782
AT5G27550			P-loop containing nucleoside t...		Lus10029914 [exp]	3.0	0.9787
AT2G20590			Reticulon family protein (.1.2...		Lus10039890 [exp]	3.2	0.9773
AT3G05330		ATN ,ATTAN	A. THALIANA TAN1, TANGLED, cyc...		Lus10029912 [exp]	6.5	0.9668
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10017715 [exp]	6.5	0.9756
AT3G15550			unknown protein		Lus10025758 [exp]	6.7	0.9717
AT5G48310			unknown protein		Lus10016071 [exp]	6.9	0.9695
AT3G21620			ERD (early-responsive to dehyd...		Lus10035300 [exp]	8.7	0.9666

Compare expression of checked genes

Lus10032452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.