Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49000 63 / 5e-12 unknown protein AT3G18560 51 / 9e-08 unknown protein AT1G71740 40 / 0.0002 unknown protein AT3G14760 40 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042953 [exp] 295 / 9e-101 AT1G49000 67 / 8e-14 unknown protein Lus10034266 [exp] 57 / 9e-10 AT1G71740 53 / 4e-09 unknown protein Lus10041497 [exp] 57 / 1e-09 AT1G71740 51 / 2e-08 unknown protein Lus10042773 [exp] 40 / 0.0003 AT1G71740 81 / 8e-21 unknown protein Lus10029742 [exp] 40 / 0.0005 AT1G71740 82 / 5e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G059500 [exp] 86 / 2e-20 AT1G49000 111 / 1e-31 unknown protein Potri.010G130600 [exp] 58 / 4e-10 AT1G49000 77 / 2e-18 unknown protein Potri.004G088300 [exp] 50 / 1e-07 AT1G49000 50 / 4e-08 unknown protein Potri.017G128700 [exp] 44 / 1e-05 AT3G18560 48 / 3e-07 unknown protein Potri.011G103500 [exp] 42 / 0.0001 AT3G14760 121 / 6e-35 unknown protein Potri.001G382800 [exp] 40 / 0.0006 AT3G14760 109 / 3e-30 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032453 pacid=23146371 polypeptide=Lus10032453 locus=Lus10032453.g ID=Lus10032453.BGIv1.0 annot-version=v1.0 ATGGATTCATCAACCACCGAACCAACGTCGCCGGAGTTTCATGCCGCCGCTGGAATCGGCGGAGGCGGCTCGTTGAAGCGGCTGACAATCGGCCTCCCGC TGTCCATATCATCCCTCGTGGCTCACTGTTCCAAACCCAAATTACCCAAACCAGCCGTACCGCCACCACCTCCTCCAAGTACTCCAACGAGGCATCTACA ACTCCACCTCTACTTAAACCGAGACTCCCCTCTCGTCCGCCGCTCCAAGCGCCTCCTCGCCCAAATCGAGGACAAAAAAGTAATTTCCCCAAGTAGATTG GTACGCCAATCGAAGCAGCTAGTCAGGCAAATCAGCAACAAGGCAATTACCTTGGTCAACGGCAATAACAAGAATAACCGCACGTCCACGTCATCATCAT CAGCCGGAAAACTAGACATCGTCGCCGTGCCGGATGTGGACGGAAGGGGAAGCTCTACTACAAGGTCTCCGATGAGGTCGCCGCCGGTGGTTCTACGCCA GTACTCCAAAAAGATTCTGACGCAAATCGGAAACAAGGCGGTGGGTTTGGTTCACCGGAGCAAGAGTGGGAAAGACAGGAGATCATCGTCAGAGATGGAG GATGAGTTTGGGGACGGAGGGGTGTGGCAGAGGTCGATTTTGCTGGGGGATAAGTGCCAGCCGCTGGCTTTCTCCGGCGTCATTTATTACGACAGCCGCG GCAAGCGTACGAATAACGATGATCGGCAGTTGGCACTCCGTGATAGCCCGTTTCATCATGCCTGCCCTACCTGCGGGAAATGA
AA sequence Show only first row Show all	>Lus10032453 pacid=23146371 polypeptide=Lus10032453 locus=Lus10032453.g ID=Lus10032453.BGIv1.0 annot-version=v1.0 MDSSTTEPTSPEFHAAAGIGGGGSLKRLTIGLPLSISSLVAHCSKPKLPKPAVPPPPPPSTPTRHLQLHLYLNRDSPLVRRSKRLLAQIEDKKVISPSRL VRQSKQLVRQISNKAITLVNGNNKNNRTSTSSSSAGKLDIVAVPDVDGRGSSTTRSPMRSPPVVLRQYSKKILTQIGNKAVGLVHRSKSGKDRRSSSEME DEFGDGGVWQRSILLGDKCQPLAFSGVIYYDSRGKRTNNDDRQLALRDSPFHHACPTCGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49000			unknown protein		Lus10032453 [exp]	0	1
AT1G68620			alpha/beta-Hydrolases superfam...		Lus10041473 [exp]	2.2	0.9262
					Lus10042011 [exp]	2.4	0.9403
AT2G28790			Pathogenesis-related thaumatin...		Lus10040843 [exp]	5.1	0.9316
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10029081 [exp]	7.9	0.8396
AT1G31490			HXXXD-type acyl-transferase fa...		Lus10023806 [exp]	8.1	0.9311
AT2G38600			HAD superfamily, subfamily III...		Lus10017060 [exp]	8.1	0.9196
AT2G38600			HAD superfamily, subfamily III...		Lus10021380 [exp]	8.5	0.9098
AT2G37900			Major facilitator superfamily ...		Lus10012663 [exp]	8.7	0.9263
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10010917 [exp]	9.3	0.8705
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10019675 [exp]	10.0	0.9040

Compare expression of checked genes

Lus10032453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.