Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28710 245 / 6e-79 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) AT1G28695 232 / 4e-74 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28700 231 / 2e-73 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G44820 185 / 2e-55 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G02061 186 / 3e-55 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G19970 189 / 3e-54 unknown protein AT1G14590 179 / 7e-53 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G15970 172 / 1e-50 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G40900 109 / 3e-27 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G70630 55 / 5e-08 Nucleotide-diphospho-sugar transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019139 [exp] 186 / 4e-56 AT1G14590 406 / 8e-142 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10034422 [exp] 187 / 6e-56 AT1G14590 411 / 2e-143 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10017981 [exp] 184 / 7e-55 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041973 [exp] 181 / 2e-53 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031927 [exp] 177 / 3e-53 AT1G14590 386 / 7e-135 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031330 [exp] 179 / 1e-52 AT2G02061 359 / 4e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031903 [exp] 179 / 1e-52 AT2G02061 361 / 1e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041976 [exp] 174 / 6e-51 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041977 [exp] 169 / 6e-49 AT1G14590 296 / 9e-98 Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G112600 [exp] 317 / 3e-107 AT1G28710 306 / 6e-104 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.015G110600 [exp] 300 / 2e-100 AT1G28710 300 / 2e-101 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G139800 [exp] 264 / 6e-86 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G051600 [exp] 264 / 1e-85 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.010G099400 [exp] 203 / 7e-62 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G142200 [exp] 196 / 9e-60 AT1G14590 454 / 2e-160 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G037300 [exp] 190 / 1e-57 AT1G14590 404 / 1e-140 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.015G029200 [exp] 187 / 2e-56 AT1G14590 405 / 8e-141 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.002G166000 [exp] 48 / 6e-06 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.008G186800 [exp] 48 / 9e-06 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10032455 pacid=23146388 polypeptide=Lus10032455 locus=Lus10032455.g ID=Lus10032455.BGIv1.0 annot-version=v1.0 ATGAGACCCGGGAAGACAAGTAACCGAAACACTGAAACTACACATACCAGAAGAGCATTATGTCTTCTAATCATGTGCCTTGTCGGCCTCTTGTTCGTTG CAAAAAACGACCATTCATCACCCTCCAACAGCTCAGCATCCAATCGTCACGACGATTCAGTTACAATTAATAACGGGGATGCCCTTGGGGCGGTGCTGGC TGACACGGCGACGGCCGACAGCAAGACTTTGATCATTGCAACGGTTAACAGGGCGTCCGTCGAAGAAGGCGATACCCCAATCTTAGATATTTTCTTGGGC ACTTTCTGGGTGGGGGAGGGGACCAGGGATCTTGTGGATCACCTGCTCTTGGTCGCCATTGACCAGACCGCTTACGATCGGTGTAGGTTCCTCCGCCTCC ACTGCTACCGTCTTCCTGTCGGGGAAGACAAAGGAGATGAAATGATGTTCAATTCGCCCGAGTTCGCCTGGCTGATGTGGCGACGGATCAAGTTCCTCGG CGACGTTCTCAGACGTGGCTATAGCTTCATTTTTACGGACATAGACGTGCTATGGCTTCGGAACCCATTCCAAGTATTAAGCCAGAACACATCCATAGAC CTCCAAATAAGCACCGAAAAGTTCAACGGAGACGAGTGGACCCCGTCGCAAACAAACCAGATGAACTGCGGTTTCTACATGGTACGGTCCAACAACAGAA CCATCTCCTTGTTCGAGCAGTGGTACCGGAAGAAGGACATCACCATGGCCACAGGCAAGGGGAAGCACGAGCAGAACGTGCTCAACGAGATGGCTTGGGA AGGGCAGTTTCGGGATTTAGGGGTGGTGGTCAGGTTAATGGACACCCTCTACTTCAGCGGGTTCTGCCAGGAGAGCCGCGACATCAGATTGGTCGTTACT GTTCATGCTAACTGCTGCCGGAGCATTGCCGCTAAAGTTGCGGACCTTAAAGATGTGGTTGCGCAATGGAAGATGTTCAGGAGAGATGAGGTGTCGTTTG GGCATACGGGCGTGCTGGCCAATATGACGCATATTGCTTGCTGGATGTCTTGGATCTGA
AA sequence Show only first row Show all	>Lus10032455 pacid=23146388 polypeptide=Lus10032455 locus=Lus10032455.g ID=Lus10032455.BGIv1.0 annot-version=v1.0 MRPGKTSNRNTETTHTRRALCLLIMCLVGLLFVAKNDHSSPSNSSASNRHDDSVTINNGDALGAVLADTATADSKTLIIATVNRASVEEGDTPILDIFLG TFWVGEGTRDLVDHLLLVAIDQTAYDRCRFLRLHCYRLPVGEDKGDEMMFNSPEFAWLMWRRIKFLGDVLRRGYSFIFTDIDVLWLRNPFQVLSQNTSID LQISTEKFNGDEWTPSQTNQMNCGFYMVRSNNRTISLFEQWYRKKDITMATGKGKHEQNVLNEMAWEGQFRDLGVVVRLMDTLYFSGFCQESRDIRLVVT VHANCCRSIAAKVADLKDVVAQWKMFRRDEVSFGHTGVLANMTHIACWMSWI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28710			Nucleotide-diphospho-sugar tra...		Lus10032455 [exp]	0	1
AT3G24310	MYB	MYB305, ATMYB71	MYB DOMAIN PROTEIN 71, myb dom...		Lus10014453 [exp]	8.1	0.7870
					Lus10033897 [exp]	19.2	0.7871
					Lus10022970 [exp]	54.8	0.7253
					Lus10004843 [exp]	58.0	0.7565
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012547 [exp]	97.3	0.7060
AT3G52160		KCS15	3-ketoacyl-CoA synthase 15 (.1...		Lus10000219 [exp]	101.4	0.7310
AT1G51340			MATE efflux family protein (.1...		Lus10016412 [exp]	129.3	0.7036
AT3G50980		XERO1	dehydrin xero 1 (.1)		Lus10003340 [exp]	137.8	0.6924
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10020165 [exp]	140.0	0.6977
					Lus10028051 [exp]	240.0	0.6890

Compare expression of checked genes

Lus10032455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.