Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18180 248 / 2e-78 Glycosyltransferase family 61 protein (.1) AT3G18170 245 / 2e-78 Glycosyltransferase family 61 protein (.1) AT2G41640 182 / 6e-53 Glycosyltransferase family 61 protein (.1.2) AT3G10320 176 / 7e-51 Glycosyltransferase family 61 protein (.1) AT3G57380 171 / 7e-49 Glycosyltransferase family 61 protein (.1) AT2G03360 154 / 8e-43 Glycosyltransferase family 61 protein (.1.2) AT2G03370 150 / 2e-41 Glycosyltransferase family 61 protein (.1) AT4G33590 43 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042956 [exp] 657 / 0 AT3G18180 283 / 6e-91 Glycosyltransferase family 61 protein (.1) Lus10016707 [exp] 341 / 7e-114 AT3G18180 367 / 3e-122 Glycosyltransferase family 61 protein (.1) Lus10036003 [exp] 339 / 4e-113 AT3G18180 360 / 2e-119 Glycosyltransferase family 61 protein (.1) Lus10032460 [exp] 307 / 6e-101 AT3G18180 308 / 2e-100 Glycosyltransferase family 61 protein (.1) Lus10042954 [exp] 299 / 2e-100 AT3G18170 266 / 4e-87 Glycosyltransferase family 61 protein (.1) Lus10032459 [exp] 298 / 2e-96 AT3G18180 283 / 2e-88 Glycosyltransferase family 61 protein (.1) Lus10032454 [exp] 225 / 3e-72 AT3G18170 197 / 6e-61 Glycosyltransferase family 61 protein (.1) Lus10018048 [exp] 189 / 1e-55 AT2G41640 569 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10018046 [exp] 185 / 3e-54 AT3G10320 530 / 0.0 Glycosyltransferase family 61 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G042200 [exp] 315 / 9e-104 AT3G18180 441 / 3e-151 Glycosyltransferase family 61 protein (.1) Potri.012G051500 [exp] 314 / 5e-103 AT3G18170 451 / 1e-155 Glycosyltransferase family 61 protein (.1) Potri.015G042300 [exp] 303 / 6e-99 AT3G18170 438 / 1e-150 Glycosyltransferase family 61 protein (.1) Potri.016G057000 [exp] 183 / 4e-53 AT2G41640 584 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.006G048500 [exp] 178 / 2e-51 AT2G41640 604 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.010G162200 [exp] 146 / 7e-40 AT2G03360 407 / 3e-139 Glycosyltransferase family 61 protein (.1.2) Potri.010G162100 [exp] 145 / 2e-39 AT2G03360 371 / 1e-124 Glycosyltransferase family 61 protein (.1.2) Potri.008G092700 [exp] 143 / 1e-38 AT2G03360 377 / 1e-127 Glycosyltransferase family 61 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04577 [flax] [poplar] DUF563 Protein of unknown function (DUF563)
Representative CDS sequence Show only first row Show all	>Lus10032457 pacid=23146213 polypeptide=Lus10032457 locus=Lus10032457.g ID=Lus10032457.BGIv1.0 annot-version=v1.0 ATGTGGTCAGTAAGAGAATGGTCAATAAAAATCAAGGCTGAAAACGACCGGGATTTACCATCTTGTCCTCCTCCTCAACCCCATGAAGATTCTTCTTCTT CCGGCGCCGCCGTCATTTTCTCCCTTGCTGGATACTGCGGAAACATGTTCCATTTCATGACCGATATTCTGGTCCCTCTGTTCGCCACCGCACGCCCCTT CTACCGTCAGGTTCGTCTCTTGACCACCAACCATCAAGACTGGTTTGTCCCTCGATTCAGCAACATACTGCAAGCCTTATCCAGGTATGAAGTGGTGGAT ATCGACAAGGAACAACAACTCGGAGAGAAAGTTTACTGCTTCTCAAGGCTAACACTAGGACTCAAAGGGCCACCTAACAATTACAGAGAACTCAACATCA ACCAAACCGAAACCGGATACACAACGAATGATTTCCACCGGTTCCTAAGAAGTGTCTTCTCATTGAACGAAACAAGTACCGCAACGAAACTACAAGACAA CAACAACACAACAAGAACAATGGTGCCAGTGCCACGACTTCTGATCATTAACCGGACAACAACACGAGTCATAAAAAACGTGAATGATGTCGCGGTTATG GCTACAAAACTCGGGTTCGAGGTAACAGTGGCGGATCTAGACAAAAACATGTCACGAACGGCTGAGATCGTAGATAAATGCGACGTCATGATGGGAGTTC ACGGTGCGGGGCTGACCAACTTGTTCTTCCTGCCGGATAACGCAGTTCTGATCCAGGTGGTTCCGTACGGTACGGAATGGGTATCCAGGAACGCATTCGG GGACCCGACTGAAGATATGAACTTGAGGTACTTGGCGTATAATGTTGAGAAACACGAGAGCAGTTTGTCGGAGCAGTACCCACCTGACCACGCCGTTTTC ACTGACGGAGAGTTTCTTGCCGACCAAGGGTGGAGTAAATGGGGCCATATTTTTCTGGACAACCAAAATGTAACGCTTGATTTGGAGAGGTTCAAAGGAA CGCTGTTGCAAGCTTTAATGCTTTTGCATCAGTGA
AA sequence Show only first row Show all	>Lus10032457 pacid=23146213 polypeptide=Lus10032457 locus=Lus10032457.g ID=Lus10032457.BGIv1.0 annot-version=v1.0 MWSVREWSIKIKAENDRDLPSCPPPQPHEDSSSSGAAVIFSLAGYCGNMFHFMTDILVPLFATARPFYRQVRLLTTNHQDWFVPRFSNILQALSRYEVVD IDKEQQLGEKVYCFSRLTLGLKGPPNNYRELNINQTETGYTTNDFHRFLRSVFSLNETSTATKLQDNNNTTRTMVPVPRLLIINRTTTRVIKNVNDVAVM ATKLGFEVTVADLDKNMSRTAEIVDKCDVMMGVHGAGLTNLFFLPDNAVLIQVVPYGTEWVSRNAFGDPTEDMNLRYLAYNVEKHESSLSEQYPPDHAVF TDGEFLADQGWSKWGHIFLDNQNVTLDLERFKGTLLQALMLLHQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18180			Glycosyltransferase family 61 ...		Lus10032457 [exp]	0	1
AT5G57520	C2H2ZnF	ATZFP2, ZFP2	zinc finger protein 2 (.1)		Lus10025471 [exp]	2.0	0.7771
AT3G54200			Late embryogenesis abundant (L...		Lus10039665 [exp]	4.5	0.8445
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10000168 [exp]	7.2	0.7808
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10002395 [exp]	8.8	0.7808
AT1G51940			protein kinase family protein ...		Lus10036847 [exp]	11.5	0.5569
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10025536 [exp]	11.8	0.6871
					Lus10005203 [exp]	12.2	0.6376
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10005834 [exp]	12.6	0.7754
AT1G17930			Aminotransferase-like, plant m...		Lus10005495 [exp]	14.1	0.7429
					Lus10011594 [exp]	15.2	0.7429

Compare expression of checked genes

Lus10032457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.