Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 120 / 1e-30 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G06240 92 / 2e-20 F-box family protein (.1) AT4G22390 76 / 3e-15 F-box associated ubiquitination effector family protein (.1) AT3G23880 74 / 1e-14 F-box and associated interaction domains-containing protein (.1) AT3G07870 72 / 1e-13 F-box and associated interaction domains-containing protein (.1) AT3G62380 56 / 2e-08 unknown protein AT1G71320 48 / 7e-06 F-box family protein (.1) AT1G49790 44 / 9e-05 F-box associated ubiquitination effector family protein (.1.2) AT2G05600 41 / 0.0007 F-box associated ubiquitination effector family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017605 [exp] 314 / 1e-106 AT4G12560 118 / 3e-30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10017604 [exp] 139 / 8e-40 AT4G12560 77 / 7e-17 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10039024 [exp] 115 / 1e-28 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031512 [exp] 96 / 9e-22 AT3G16210 100 / 8e-23 F-box family protein (.1) Lus10027322 [exp] 82 / 4e-18 AT4G12560 150 / 6e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10037892 [exp] 84 / 7e-18 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10008871 [exp] 82 / 7e-17 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10043335 [exp] 80 / 7e-17 AT4G12560 84 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038606 [exp] 81 / 1e-16 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G010800 [exp] 176 / 2e-51 AT4G12560 159 / 2e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 158 / 2e-44 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 142 / 1e-38 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013200 [exp] 113 / 6e-28 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154700 [exp] 113 / 7e-28 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012500 [exp] 113 / 7e-28 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154500 [exp] 98 / 2e-22 AT4G12560 139 / 7e-37 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012700 [exp] 98 / 2e-22 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058000 [exp] 84 / 6e-18 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.008G199800 [exp] 83 / 3e-17 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032458 pacid=23146337 polypeptide=Lus10032458 locus=Lus10032458.g ID=Lus10032458.BGIv1.0 annot-version=v1.0 ATGCAATGGAATCTCTTTCTCTTCATCAGCGAACTCCACGGTGACTACATCGTCGCCGAATACGTGAACGGCCTCCAACAAGGAACCGGCCGCACACCTC CTGCGCAAAGTAGCGGCACTGATCCACGCTCTGTCTTTTCCCTATTGGGATCCTGCAACGGATTGGTCTACTTCGCCTGTGACTGGGAAAAGGTACTCTT ATCGAATCCCGCTACTAGAAACGGTTACTTTCTGCCGTTTACACTCGACGTGAAACCAGACAATGTGGGGGCTTACAGCTCCCTCGACGGCATGCATAAG GTAATTTACAGCCACGGGTACGGATTCGGGTACGTTTCCACCTCGGAAGACTATCACGTAGTCCAGATTGTTCAGGTGTTCAAGCCAGAAGAAAATTCTC TCCAATCTCAATTGGCTAGTTATGGAATTAGGTCGAATTCTTGCGTAGAGGTTGAGTTCCCTTATATCCTAATTGGTCCGCTGCAAACAGGTGTGTTTGT GAGTGGGGCTATTCATTGGACAGTTGTTAGGCCCAAGGAGGATCCGAACAATGACAGTGAGATGTTGATTGTTGGATTTGATTTAGGGCTCAATGAATTC AGGGAGGTGCCGCAGCCAGACTACACAGATGGGGAATCGTTCAGCTTGAAACTTGGCCAGCTAGGGAACTGTCTCTGTATCTTTGCTGATTACAAGGATA AGTTTGTGGATGTATGGATAATGAAAGAGTATGGCGTTAAGGAGTCGTGGAGCATAGCGTTCTCGGTTCCACATCCCGAGTTGTGCTACAGTCATGGGGT CGTGCCTATGGGATTCTCCGTGACTGGTAAGGAGGTTCTTCTGCAGTTGGATGGCAAGAGGCTTGTTTGGTATGACCTCAAGGATCCTAAGAAGGTTGCT GCTGCTGAGGAGATCACCGTCTGTGGCTTGAAGGGGAATATGGATGCAGTTGTCTGCTTTGGAAGCCTGGTTTCGCCCTTTCCACCTCCCAAAGAGAAAG TGAAGAAAGTTGACAAACAACAGCAGAAACCAGAACCGCAAAGGAAGAAGAGGTTTGGTGATCTGGTCTTTCTCGTCTAA
AA sequence Show only first row Show all	>Lus10032458 pacid=23146337 polypeptide=Lus10032458 locus=Lus10032458.g ID=Lus10032458.BGIv1.0 annot-version=v1.0 MQWNLFLFISELHGDYIVAEYVNGLQQGTGRTPPAQSSGTDPRSVFSLLGSCNGLVYFACDWEKVLLSNPATRNGYFLPFTLDVKPDNVGAYSSLDGMHK VIYSHGYGFGYVSTSEDYHVVQIVQVFKPEENSLQSQLASYGIRSNSCVEVEFPYILIGPLQTGVFVSGAIHWTVVRPKEDPNNDSEMLIVGFDLGLNEF REVPQPDYTDGESFSLKLGQLGNCLCIFADYKDKFVDVWIMKEYGVKESWSIAFSVPHPELCYSHGVVPMGFSVTGKEVLLQLDGKRLVWYDLKDPKKVA AAEEITVCGLKGNMDAVVCFGSLVSPFPPPKEKVKKVDKQQQKPEPQRKKRFGDLVFLV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10032458 [exp]	0	1
AT5G59190			subtilase family protein (.1)		Lus10009867 [exp]	2.6	0.9183
AT3G21300			RNA methyltransferase family p...		Lus10009743 [exp]	3.7	0.9013
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10042033 [exp]	4.9	0.8702
AT2G31530		EMB2289, SCY2	SECY HOMOLOG 2, EMBRYO DEFECTI...		Lus10014663 [exp]	5.5	0.8773
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10037760 [exp]	6.0	0.8866
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10012937 [exp]	9.2	0.8771
AT4G33940			RING/U-box superfamily protein...		Lus10014366 [exp]	11.5	0.8398
AT3G15140			Polynucleotidyl transferase, r...		Lus10009194 [exp]	12.8	0.8848
AT3G57000			nucleolar essential protein-re...		Lus10035222 [exp]	13.7	0.8193
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10010101 [exp]	13.7	0.8689

Compare expression of checked genes

Lus10032458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.