Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18180 255 / 1e-77 Glycosyltransferase family 61 protein (.1) AT3G18170 249 / 2e-76 Glycosyltransferase family 61 protein (.1) AT3G10320 183 / 9e-51 Glycosyltransferase family 61 protein (.1) AT2G41640 181 / 7e-50 Glycosyltransferase family 61 protein (.1.2) AT3G57380 180 / 2e-49 Glycosyltransferase family 61 protein (.1) AT2G03370 155 / 5e-41 Glycosyltransferase family 61 protein (.1) AT2G03360 154 / 1e-40 Glycosyltransferase family 61 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016707 [exp] 447 / 4e-151 AT3G18180 367 / 3e-122 Glycosyltransferase family 61 protein (.1) Lus10036003 [exp] 430 / 1e-144 AT3G18180 360 / 2e-119 Glycosyltransferase family 61 protein (.1) Lus10032460 [exp] 389 / 8e-129 AT3G18180 308 / 2e-100 Glycosyltransferase family 61 protein (.1) Lus10042954 [exp] 337 / 2e-111 AT3G18170 266 / 4e-87 Glycosyltransferase family 61 protein (.1) Lus10042956 [exp] 342 / 1e-110 AT3G18180 283 / 6e-91 Glycosyltransferase family 61 protein (.1) Lus10032457 [exp] 292 / 2e-93 AT3G18180 248 / 1e-78 Glycosyltransferase family 61 protein (.1) Lus10032454 [exp] 237 / 3e-73 AT3G18170 197 / 6e-61 Glycosyltransferase family 61 protein (.1) Lus10035441 [exp] 177 / 3e-48 AT2G41640 560 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10031057 [exp] 176 / 1e-47 AT2G41640 543 / 0.0 Glycosyltransferase family 61 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G042300 [exp] 325 / 2e-103 AT3G18170 438 / 1e-150 Glycosyltransferase family 61 protein (.1) Potri.012G051500 [exp] 318 / 1e-100 AT3G18170 451 / 1e-155 Glycosyltransferase family 61 protein (.1) Potri.015G042200 [exp] 313 / 3e-99 AT3G18180 441 / 3e-151 Glycosyltransferase family 61 protein (.1) Potri.006G048500 [exp] 177 / 2e-48 AT2G41640 604 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.016G057000 [exp] 177 / 3e-48 AT2G41640 584 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.010G162100 [exp] 155 / 5e-41 AT2G03360 371 / 1e-124 Glycosyltransferase family 61 protein (.1.2) Potri.010G162200 [exp] 149 / 9e-39 AT2G03360 407 / 3e-139 Glycosyltransferase family 61 protein (.1.2) Potri.008G092700 [exp] 144 / 2e-37 AT2G03360 377 / 1e-127 Glycosyltransferase family 61 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04577 [flax] [poplar] DUF563 Protein of unknown function (DUF563)
Representative CDS sequence Show only first row Show all	>Lus10032459 pacid=23146324 polypeptide=Lus10032459 locus=Lus10032459.g ID=Lus10032459.BGIv1.0 annot-version=v1.0 ATGGTGGCCAGAAGCATCAGGAAATACGAGCAGAAGATGTGGCAAATTACCGCCGCATCCATAGCTTGCTTCATCCTCTTTATTAGATTCTACATCCTCC TTAATGCGCCTGATCTCCCACCACCTGGTCATCAAACGTGGCCGGGAAATGTTGTTACTATGACATCGTCGACGATCCAGAAGAAGACAGAAGGTGGAAG AACAATAACGGAGGAGACCCCCACCGTCAAAGATGCCACCAACTGTGAGAAATTAGATGAAGATCATGATGTTGGGTCGGAACAGAGGAAATCAACCGCT ACGGCGCCGTATGTATGCAAGAAGGGTGGAAGATCAGAGTTCTGCGACTTGGAAGGTGACATCAGGATTGATCCAGATTCTCCTACTATTTACTACGTCG TTTCATCGTCGACATCATCAGCAACACAAACAAGCCTGACGTTATCAGCCGGAGGAAATTCCACTAGTAGTAACAATGCTACTCCGTCACTGACCATAAA GCCATACGCAAGAAACGACGACCGATTTGCCATGGGATCTGTGAGGGAATGGTCGGTGAAAGTGGTGCCGGAAACTTATCAAGATCTTCCGTTTTGCAAC GAGATTCATGATGCTCCGGGTGTTGTGTTTTCTTTTGGAGGATACGCTGGCAACCATTTCCACTCCTTCGCCGACGTTCTCATCCCGCTCTTCGCCACTT CCCACCCCTTCAACCGTGAAGTTGAGCTTCTGGTTACGGATAACCAATTGTGGCTGCTTCAAAAGTTCAGAGCTATAATGCAAGGACTATCCTCGTACGA CGTGATAGACATCGATCGGGAACAGCAAGGTGGCAAAAGCCATTGTTTCTCGAGGCTAATACTAGGCCTGAAAGGAAGACAAACAATAGATTTCGGGATC AACTCATCAGAATCAACATACACAATGAGAGACTTCAAGCAGTTTTTAAGAAGCACCTACTTCTTAAACAAGACGACCGCAATCAAGCTAAGAAATAGGA AGTCCGCGCCGCAGCTTCTGATAATATCCCGAGAAACGAACCGCCTGTTGACGAATACGGACGAAGTCACGTGGATGGCAGCCAAACTCGGGTACAACGT GACGGTCGCAGGATTCGACATGAACGTTACGAGGTCGGCAGAGATCATGAATCCGTTCGACGTTGTCGTTGGAGTTCATGGAGCCGGTCTGGCGAACATG GTTTTCTTGCCGGACAATGCGGTTGTGGTCCAAGTGGTGCCGTACGCGACGGATTGCTTTGCCCAAAAGTACGAGCCGTCGAAGGAGATGAGCGTGCGGT ACGTGGAGTATAAGATAAAGAAGGAAGAGAGCAGTTTGATGGAAAAGTATGTGCCTGACGACGTTGTTTTTACCAACCCGACTTCGTTCGAATGGGACGT GTTTAAACCGATTTTCTTCGACGGCCAAGATGTGAAAGTTGATCTCAAGAGGTTCAAGCTGACGTTGTTGAAAGCCTTGGCCCTGCTTTGGGATCGGGGT AAAGTGGAGAAATCTAGTTTGGTTCTGGCTGGAGGGGGAGCAGATACCATAGTCGAGGCTTCATTGGAAACGGATACTAGAGTAAATGCTCAACAAGATT TGATCGCTCAAAATTCTATGCAAGTGGAGGTCACCAACCGGAGCCCTGAAGATAATATAATTTTCTGTCATATTGAAGAAATGATTTCACCGGTGGTGCA GAATGCTTTGGAAGAGACATCTGATGAGTGTGTTGAAGAGCAAGTGGATGAGGAGATAGGCATGGAAAATTCTAATGGATCTCTAGTTATACGTACCCCG GGACAAACTATCCTTGGTGATTTCATAATTAAAGGGAGTCTTCCTCCTGCAAAGGCTAAGAGAGGTAGGAAAAGAGGTAAAAAGATCTGA
AA sequence Show only first row Show all	>Lus10032459 pacid=23146324 polypeptide=Lus10032459 locus=Lus10032459.g ID=Lus10032459.BGIv1.0 annot-version=v1.0 MVARSIRKYEQKMWQITAASIACFILFIRFYILLNAPDLPPPGHQTWPGNVVTMTSSTIQKKTEGGRTITEETPTVKDATNCEKLDEDHDVGSEQRKSTA TAPYVCKKGGRSEFCDLEGDIRIDPDSPTIYYVVSSSTSSATQTSLTLSAGGNSTSSNNATPSLTIKPYARNDDRFAMGSVREWSVKVVPETYQDLPFCN EIHDAPGVVFSFGGYAGNHFHSFADVLIPLFATSHPFNREVELLVTDNQLWLLQKFRAIMQGLSSYDVIDIDREQQGGKSHCFSRLILGLKGRQTIDFGI NSSESTYTMRDFKQFLRSTYFLNKTTAIKLRNRKSAPQLLIISRETNRLLTNTDEVTWMAAKLGYNVTVAGFDMNVTRSAEIMNPFDVVVGVHGAGLANM VFLPDNAVVVQVVPYATDCFAQKYEPSKEMSVRYVEYKIKKEESSLMEKYVPDDVVFTNPTSFEWDVFKPIFFDGQDVKVDLKRFKLTLLKALALLWDRG KVEKSSLVLAGGGADTIVEASLETDTRVNAQQDLIAQNSMQVEVTNRSPEDNIIFCHIEEMISPVVQNALEETSDECVEEQVDEEIGMENSNGSLVIRTP GQTILGDFIIKGSLPPAKAKRGRKRGKKI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18180			Glycosyltransferase family 61 ...		Lus10032459 [exp]	0	1
AT2G16190			unknown protein		Lus10040480 [exp]	7.6	0.5767
					Lus10028981 [exp]	12.0	0.5726
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10018546 [exp]	41.9	0.5453
AT2G31760		ATARI10, ARI10	ARABIDOPSIS ARIADNE 10, ARIADN...		Lus10000131 [exp]	70.1	0.4932
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029379 [exp]	140.7	0.4898
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007059 [exp]	272.9	0.4288
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10016168 [exp]	273.4	0.4288
					Lus10034545 [exp]	273.9	0.4288
AT4G16195			Plant self-incompatibility pro...		Lus10017929 [exp]	274.3	0.4288
AT5G67090			Subtilisin-like serine endopep...		Lus10002044 [exp]	274.8	0.4288

Compare expression of checked genes

Lus10032459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.