Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68800 88 / 6e-19 TCP TCP12, BRC2, TCP18 BRANCHED 2, TCP domain protein 12 (.1) AT1G67260 85 / 7e-18 TCP TCP1 TCP family transcription factor (.1.2) AT3G18550 84 / 2e-17 TCP AtBRC1, ATTCP18, TCP18, BRC1, TCP12 BRANCHED 1, TCP family transcription factor (.1.2) AT1G53230 81 / 3e-16 TCP TCP3 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) AT3G15030 78 / 2e-15 TCP TCP4, MEE35 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) AT2G31070 76 / 9e-15 TCP TCP10 TCP domain protein 10 (.1) AT4G18390 74 / 4e-14 TCP TCP2 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) AT1G30210 69 / 8e-13 TCP ATTCP24, TCP24 TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 (.1.2) AT3G02150 66 / 1e-11 TCP TFPD, PTF1, TCP13 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) AT5G08070 64 / 3e-11 TCP TCP17 TCP domain protein 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042962 [exp] 265 / 2e-83 AT1G68800 94 / 5e-21 BRANCHED 2, TCP domain protein 12 (.1) Lus10035055 [exp] 84 / 7e-18 AT1G68800 102 / 7e-25 BRANCHED 2, TCP domain protein 12 (.1) Lus10021713 [exp] 84 / 1e-17 AT3G18550 107 / 2e-26 BRANCHED 1, TCP family transcription factor (.1.2) Lus10000463 [exp] 79 / 1e-15 AT3G15030 224 / 1e-69 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Lus10003078 [exp] 77 / 2e-15 AT1G67260 105 / 2e-25 TCP family transcription factor (.1.2) Lus10034072 [exp] 77 / 6e-15 AT1G67260 100 / 4e-23 TCP family transcription factor (.1.2) Lus10023297 [exp] 69 / 3e-12 AT4G18390 207 / 8e-63 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10038512 [exp] 69 / 5e-12 AT4G18390 204 / 1e-60 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10017856 [exp] 64 / 5e-11 AT5G60970 175 / 6e-52 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G050500 [exp] 97 / 1e-21 AT1G68800 86 / 2e-18 BRANCHED 2, TCP domain protein 12 (.1) Potri.012G059900 [exp] 92 / 4e-20 AT1G68800 84 / 6e-18 BRANCHED 2, TCP domain protein 12 (.1) Potri.010G130200 [exp] 92 / 8e-20 AT1G68800 121 / 2e-30 BRANCHED 2, TCP domain protein 12 (.1) Potri.008G115800 [exp] 89 / 8e-19 AT1G68800 119 / 8e-30 BRANCHED 2, TCP domain protein 12 (.1) Potri.017G112000 [exp] 81 / 1e-16 AT1G67260 111 / 1e-27 TCP family transcription factor (.1.2) Potri.019G091300 [exp] 79 / 6e-16 AT3G15030 227 / 5e-71 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.013G119400 [exp] 78 / 1e-15 AT3G15030 243 / 4e-77 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.001G375800 [exp] 77 / 3e-15 AT1G53230 279 / 1e-90 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) Potri.011G096600 [exp] 77 / 3e-15 AT3G15030 262 / 7e-84 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.004G065800 [exp] 71 / 6e-13 AT4G18390 151 / 2e-41 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [flax] [poplar] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Lus10032465 pacid=23146381 polypeptide=Lus10032465 locus=Lus10032465.g ID=Lus10032465.BGIv1.0 annot-version=v1.0 ATGTGGGAAGATTACTACAACAACAGCAACACCAATCAGCATCATATGAATACAAAGCATAATCATCATCATCATTTGCAGCACCACCTCTTGCCTAATA TCTCTGCAGGAGGAGGAGGAGGATTCTTTCAAATTCCTCCTCCTAATAGTAGCAGCAACTCAATGTTCAACTTCGTCCAATCATCATCATCATCATTTGT ATCTTCCAATACTGCCCCTGTAATTGCTGACTCTGATGATCAGCTTCTTTTTCACCACCCAGTTTGGCCACCTCCTCCTCCTCCTAATCATCATCACCAC CACCCACTAACCATGTCTACTTCAGATGATCAACAGTACCATCAAATTCCGATTACTGCTGCTGCTGCTGCTCCGAGGTCGAAGAAGACAAGTAAGACAA CAGTTACCAGGAAGAGGTGTTGGAGGAAAGACAGGCATAGTAAGATCCAGACAGCACAGGGACCAAGGGACAGGAGGATGAGGCTTTCCTTGAAAGTAGC ACGCCCTTTCTTCACCCTCCAAGATAAGCTCGGTTTCGATACGCCCAGCAACACCGTCGAGTGGCTCCTCACTCAGTCCAGATCCCAGATCGACCTCCTC TTCTCCACTAGTACTACTACCACTACTAGTACTATAAGTGACACCCAAGCAGCTGCAGCCATCATGACCACCATGCTGAAGTACATGACCACTGCTACTG ATCATAAGGACATGACCTGCAAGAGTAGTCTTGACCAAGATTCAACCAGCAGTACTGCTAATAATACTACTACTACTATCACTACTGCTCCCACCAAGGT AGTCAAGAAGAGAAAGATGGTGGACATGAAGAAGAAGACCAATAACACGAAGACGAAGAAGAAGAGTACTACTGAAAATAATGGTGAGGCAAAAGTAACG ACGAATCATCACCATCATCATGATCATCATCTAGTAGTTAAAGAGTTGAGGGACAAGGCAAGGGCAAGAGCGAGGCAACGGACCAGAGACAAGAAGCTAT TCTACTCCTCCCTCCTCATGCTCAATCGTAATAACCATGAATCTACTACTACTACTCCTACTGCTTCTTCTTCTTCTTCGTCGTCGAAAAGCTATGGATC TTGTCATCATCATGATCCACTGCACCATCACCATGAACAATTGATGATGATGTTTGATTCAACGAATCAGGATGAGGGAAAAGGTGATGGTTTCCCCATT GATCATCATCTTTGCCTTCAACAACATTTCACTACTCCTCCAACGACGACATTAATCCCACACCAACATGAGCATCAGATAGTCACTAGCAATGCAGATC AGTACTACTTCCAGTCTTTCTACAAGCAGTGGGATGCAACTGCAACTTACAACAACCTCCAGTTCGCCACCACTCGTCTACCTAATTAG
AA sequence Show only first row Show all	>Lus10032465 pacid=23146381 polypeptide=Lus10032465 locus=Lus10032465.g ID=Lus10032465.BGIv1.0 annot-version=v1.0 MWEDYYNNSNTNQHHMNTKHNHHHHLQHHLLPNISAGGGGGFFQIPPPNSSSNSMFNFVQSSSSSFVSSNTAPVIADSDDQLLFHHPVWPPPPPPNHHHH HPLTMSTSDDQQYHQIPITAAAAAPRSKKTSKTTVTRKRCWRKDRHSKIQTAQGPRDRRMRLSLKVARPFFTLQDKLGFDTPSNTVEWLLTQSRSQIDLL FSTSTTTTTSTISDTQAAAAIMTTMLKYMTTATDHKDMTCKSSLDQDSTSSTANNTTTTITTAPTKVVKKRKMVDMKKKTNNTKTKKKSTTENNGEAKVT TNHHHHHDHHLVVKELRDKARARARQRTRDKKLFYSSLLMLNRNNHESTTTTPTASSSSSSSKSYGSCHHHDPLHHHHEQLMMMFDSTNQDEGKGDGFPI DHHLCLQQHFTTPPTTTLIPHQHEHQIVTSNADQYYFQSFYKQWDATATYNNLQFATTRLPN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10032465 [exp]	0	1
AT2G29970			Double Clp-N motif-containing ...		Lus10038320 [exp]	1.0	0.8909
					Lus10039327 [exp]	4.2	0.8195
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10040108 [exp]	5.0	0.8307
AT1G27180			disease resistance protein (TI...		Lus10040576 [exp]	5.5	0.8175
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10027627 [exp]	6.0	0.8123
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Lus10017095 [exp]	6.2	0.8671
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10040909 [exp]	8.0	0.8234
AT3G57170			N-acetylglucosaminyl transfera...		Lus10003248 [exp]	9.2	0.8250
AT1G27180			disease resistance protein (TI...		Lus10023093 [exp]	10.2	0.8093
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10041449 [exp]	11.0	0.8320

Compare expression of checked genes

Lus10032465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.