Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31814 207 / 2e-60 FRL2 FRIGIDA like 2 (.1) AT5G16320 197 / 1e-56 FRL1 FRIGIDA like 1 (.1) AT5G48385 169 / 6e-46 FRIGIDA-like protein (.1) AT3G22440 129 / 1e-31 FRIGIDA-like protein (.1) AT4G14900 114 / 7e-27 FRIGIDA-like protein (.1) AT5G27230 93 / 2e-19 Frigida-like protein (.1) AT5G27220 70 / 2e-12 Frigida-like protein (.1) AT4G00650 57 / 9e-09 FLA, FRI FLOWERING LOCUS A, FRIGIDA-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042965 [exp] 836 / 0 AT1G31814 237 / 8e-72 FRIGIDA like 2 (.1) Lus10002146 [exp] 169 / 8e-46 AT5G48385 640 / 0.0 FRIGIDA-like protein (.1) Lus10008744 [exp] 166 / 1e-44 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Lus10033828 [exp] 124 / 1e-29 AT5G27230 150 / 2e-36 Frigida-like protein (.1) Lus10010560 [exp] 122 / 2e-29 AT3G22440 714 / 0.0 FRIGIDA-like protein (.1) Lus10006113 [exp] 117 / 5e-28 AT3G22440 686 / 0.0 FRIGIDA-like protein (.1) Lus10009979 [exp] 118 / 2e-27 AT5G48385 107 / 5e-24 FRIGIDA-like protein (.1) Lus10038038 [exp] 116 / 6e-27 AT5G48385 102 / 2e-22 FRIGIDA-like protein (.1) Lus10004132 [exp] 100 / 5e-22 AT5G48385 89 / 2e-18 FRIGIDA-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G206200 [exp] 311 / 3e-99 AT5G16320 220 / 1e-65 FRIGIDA like 1 (.1) Potri.014G175200 [exp] 184 / 4e-51 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Potri.002G239900 [exp] 178 / 6e-49 AT5G48385 655 / 0.0 FRIGIDA-like protein (.1) Potri.007G050800 [exp] 165 / 4e-44 AT5G48385 296 / 6e-93 FRIGIDA-like protein (.1) Potri.008G153000 [exp] 132 / 6e-33 AT3G22440 710 / 0.0 FRIGIDA-like protein (.1) Potri.005G043900 [exp] 128 / 5e-31 AT5G27230 119 / 3e-27 Frigida-like protein (.1) Potri.005G044100 [exp] 126 / 2e-30 AT5G27230 116 / 1e-26 Frigida-like protein (.1) Potri.018G078701 [exp] 124 / 8e-30 AT3G22440 189 / 4e-53 FRIGIDA-like protein (.1) Potri.005G044000 [exp] 123 / 2e-29 AT5G27230 125 / 2e-29 Frigida-like protein (.1) Potri.005G044200 [exp] 77 / 2e-14 AT5G27220 129 / 5e-30 Frigida-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Lus10032466 pacid=23146426 polypeptide=Lus10032466 locus=Lus10032466.g ID=Lus10032466.BGIv1.0 annot-version=v1.0 ATGGCGAATGCACCGACGAGGGAGAGGCAAACACTGAATACGATCGAAGCCGCTCTGAAATTGATCGACTCGAAGAAGGATAAGCTGAAGGAGGCGTACG ATGAACTTCAACTCCATTCTTCTATTCTCACCTGCTCCCTGACGTGGGATGACCTCGATTCCCACTTCTCTTCTCAGCAGGCTGATCTCAATCGCCGATT CCACCTCCTACAATCCCGGGAGAAGGCTCCCTCATCATCATCAAACAAGCAGAACGGCGTTGCGACAAATTTTAATCAAGCTTCATCTTCTCAACCAGCG GGTGACGACAGCGGTGGTGGATTTGAGTATGAGCCTGAAGATGCAGAAGGATTGGGTGAGGATGAGGAGGAACCGATGGTTCTTCAGCCGGTAGCAGCTC GCCCTGAGTTGACACTCTTCTGCGAGAAGCTGGATGGAAAAGGGTTGAGAGACTACATTAGCGACCATGCCAAGGAGAGGGTTGTCATTCGGGCCGAACT CACTAGTGCAATGCAGGTTAGCAGTGACCCTGGTACTATGGTTTTGGACGCAATGGAAGGCTTCTATCCCGCGAATTCTTCGCCTTCAAAGGACCAGCAG GAATTGTATCGTCAGCGGAAGAGTTGTTTGGACTTGTTAGAAGTGTTGGTTAATAGCAAGCCCGATGTAAGTGATGAGGTGAGGGAGAGAGCTAAACAGT TGGCATTGGAGTGGAGCGGTGAAGTGAGCTTGGCTGCTGACAATCCTTCTGAGGCGTTGGCCTTCTTGAATGTGGTGGCAGCTTTTGGATTGCGGGATCA GATCGATGTTACCGATCTCGTGAGTTATTTTGTTGCCATTGCCAAGTTCAAACAAGCTATGTCTCTCTGCCGGAATATTGGCCTGGGAGAAAACATTGCA GTTCTTGTGCAGAAACTTATAGAAAGTGGCAAACAACTTCTGGCTGTCAAATTTATTTATGAATTTGGATTGACTGACAAGTTCCAAGCAGTGTCATTAC TGAAGGAAGTTGTAAATGAGTGCAAAAAGTCCACTAACCAAGTTGGAAAGAGCCCTATCAAGGCGCAGCATGAAGCCAAGTCTAAAGAACTTAATGCATT GAAGTCGGTGCTTCAAGTCATCGACGAGCACAAACTCGAATCGGAGTATCCCAGAAAGGAGATTGAAAACCGTATAGAAATATTACAAATGCAGAATAAG ACTGATGGGAAACGGGCTACACCATCTTCCGACACCAAGCCTCAGCAGCAGCAACAACAGCCAAAGAAGAGGAAGCAAATGCCGGTAAAGAAACAGCCGC AAGGGAAGAAGCCGCAACATAATGGAAATAATCGATTCAGACCTCAAATCCGTGGGACATCATTTCACCAACCTCATTTGCAGCAGCCAACAGGATTGTA TCAAGCAGCTCGACCTTATGGCGGCATGGTGAGTGCCTCTCCTCCCGTAGGCGGCCCTTATCGAGCAGGTTCATATGCGGCTGGGCCGTACAGTTCGGCG GGACCTGGAGGGGGATTTCCTGGGAATCCAAACCGCCCTGTAGCTCAACAATACACTTCTGAGTCCCAAATGGTGCCTCCTCCAGGGTATTATGATGGTG CCCAAGCTGCTGGTTATCACGGTGGATATGGTTATCCACCTCCTCAACATCATCAAAACTACTACCCTCAATAG
AA sequence Show only first row Show all	>Lus10032466 pacid=23146426 polypeptide=Lus10032466 locus=Lus10032466.g ID=Lus10032466.BGIv1.0 annot-version=v1.0 MANAPTRERQTLNTIEAALKLIDSKKDKLKEAYDELQLHSSILTCSLTWDDLDSHFSSQQADLNRRFHLLQSREKAPSSSSNKQNGVATNFNQASSSQPA GDDSGGGFEYEPEDAEGLGEDEEEPMVLQPVAARPELTLFCEKLDGKGLRDYISDHAKERVVIRAELTSAMQVSSDPGTMVLDAMEGFYPANSSPSKDQQ ELYRQRKSCLDLLEVLVNSKPDVSDEVRERAKQLALEWSGEVSLAADNPSEALAFLNVVAAFGLRDQIDVTDLVSYFVAIAKFKQAMSLCRNIGLGENIA VLVQKLIESGKQLLAVKFIYEFGLTDKFQAVSLLKEVVNECKKSTNQVGKSPIKAQHEAKSKELNALKSVLQVIDEHKLESEYPRKEIENRIEILQMQNK TDGKRATPSSDTKPQQQQQQPKKRKQMPVKKQPQGKKPQHNGNNRFRPQIRGTSFHQPHLQQPTGLYQAARPYGGMVSASPPVGGPYRAGSYAAGPYSSA GPGGGFPGNPNRPVAQQYTSESQMVPPPGYYDGAQAAGYHGGYGYPPPQHHQNYYPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10032466 [exp]	0	1
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Lus10034263 [exp]	2.2	0.7975
AT5G44150			unknown protein		Lus10039868 [exp]	3.0	0.7629
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10015457 [exp]	6.8	0.7940
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Lus10012922 [exp]	7.9	0.7685
AT3G05670			RING/U-box protein (.1)		Lus10013501 [exp]	9.4	0.7592
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10037500 [exp]	10.1	0.7934
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Lus10020306 [exp]	13.0	0.7820
AT3G06660			PAPA-1-like family protein / z...		Lus10016899 [exp]	14.0	0.7896
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10023516 [exp]	14.9	0.7744
AT3G44850			Protein kinase superfamily pro...		Lus10005363 [exp]	17.3	0.7602

Compare expression of checked genes

Lus10032466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.