Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20050 996 / 0 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G11830 317 / 2e-101 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G18190 292 / 4e-92 TCP-1/cpn60 chaperonin family protein (.1) AT5G20890 273 / 4e-85 TCP-1/cpn60 chaperonin family protein (.1) AT5G26360 238 / 2e-71 TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 237 / 3e-71 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G02530 213 / 2e-62 TCP-1/cpn60 chaperonin family protein (.1) AT3G03960 210 / 8e-61 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 207 / 5e-60 TCP-1/cpn60 chaperonin family protein (.1) AT5G56500 60 / 4e-09 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037214 [exp] 1066 / 0 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10042966 [exp] 1063 / 0 AT3G20050 991 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10008406 [exp] 328 / 1e-105 AT3G11830 1011 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10036714 [exp] 314 / 3e-105 AT3G20050 293 / 2e-97 T-complex protein 1 alpha subunit (.1) Lus10026773 [exp] 290 / 1e-91 AT3G11830 920 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10032176 [exp] 283 / 1e-88 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10012380 [exp] 279 / 3e-87 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10014511 [exp] 278 / 3e-87 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10008670 [exp] 264 / 3e-81 AT3G18190 967 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G058500 [exp] 1003 / 0 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.002G142700 [exp] 984 / 0 AT3G20050 994 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.004G195300 [exp] 335 / 1e-108 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.009G157400 [exp] 330 / 1e-106 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.001G341100 [exp] 290 / 1e-91 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.006G128600 [exp] 290 / 2e-91 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.015G042600 [exp] 279 / 3e-87 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.012G051300 [exp] 275 / 1e-85 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G133800 [exp] 239 / 6e-72 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.T046300 [exp] 238 / 2e-71 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10032467 pacid=23146342 polypeptide=Lus10032467 locus=Lus10032467.g ID=Lus10032467.BGIv1.0 annot-version=v1.0 ATGGCGCTCTCATCCCAAACTCTGGATATTCAAGGCGAACGTCAGTCTGGCCAGGACGTCCGCGCTCAAAATGTGATGGCTTGCCAAGCAGTTGCAAACA TTGTTAAATCCTCACTAGGTCCCGTTGGGCTTGACAAGATGCTGGTGGATGATATTGGTGACGTGACCATTACTAATGATGGTGCAACAATTCTTAAGAT GCTAGAAGTGGAGCATCCTGCTGCCAAGGTGCTTGTGGAATTGGCTGAACTACAAGACAAAGAAGTTGGAGATGGAACAACTTCAGTTGTAATAGTAGCA GCAGAGTTGCTAAAGAGAGCTAATGATTTGGTGAGGAACAAGATCCATCCAACGTCAATAATCAGTGGATTCAGACTGGCAATGAGGGAAGCGTGCAAAT ATATTGATGAAAAATTGGCCGTGAAGGTTGAAAAACTTGGAAAGGATTCCCTGGTAAACTGTGCTAAGACCAGTATGTCTTCAAAATTGATAGCCGGTGA CAGCGACTTCTTCGCTAATTTGGTTGTTGATGCTGTACTATCAGTGAAGATGACAAATGTACGAGGAGAAATCAAATACCCAATCAAGGGTGTTAATATT CTAAAAGCTCATGGTAAAAGTGCAAGAGATAGTTACCTGTTGAATGGGTATGCCCTAAATACTGGCCGTGCTGCTCAAGGAATGCCAACCAAAGTCTCAC CTGCTAGAATTGCATGTCTTGACTTCAACCTTCAGAAGACAAAGATGCAATTAGGTGTACAAGTGGTTGTCACTGATCCCAGGGAGCTTGAGAAGATTCG TCAAAGGGAAGCGGATATGACAAAGGAGCGGATTGAAAAACTCTTGAAAGCGGGAGCCAACGTGATTTTAACTACCAAAGGAATTGATGACATGGCTCTA AAGTACTTTGTGGAGGCTGGAGCTATTGCTGTGAGGCGCGTCCGTAAAGAAGATATGCGCCATGTTGCCAAAGCCACTGGTGCAACCATGGTTTCAACCT TTGCTGATATGGAAGGGGATGAGACATTTGATTCTTTACTTCTTGGGTCAGCTGATCAAGTCGTAGAAGAGCGCATTGCAGATGATGATGTTGTTATGAT AAAGGGGACAAAAAACACTAGTGCGGTTTCCTTGATTCTTAGAGGAGCAAATGACTACATGCTTGATGAGATGGAGAGAGCCCTGCATGATGCTTTATGC ATTGTGAAGAGGACGTTGGAGTCCAACACAGTAGTGGCAGGTGGAGGTGCTGTTGAGTCTGCCTTGTCTGTGTACTTGGAGTATCTTGCAACAACTCTGG GATCACGAGAGCAACTGGCCATTGCTGAATTTGCTGAATCTTTGCTGATCATACCGAAGGTGCTTGCTGTCAATGCTGCAAAGGATGCAACTGATTTGGT CGCGAAGCTACGTGCGTATCACCACACTGCACAGACAAAAGCTGATAAGAAACACCTCTCCAGCATGGGACTAGACCTTTCAAAGGGTACCATTCGAAAC AACTTAGAAGCAGGAGTAATTGAACCTGCAATGAGCAAAGTGAAGATAATACAGGTCGCTAACGAAGCAGCCATAAAAAATCTCCGAATCGATGACATGA TCAAACTTGTCAAGGAAGACGATGGTCAGGAGTAG
AA sequence Show only first row Show all	>Lus10032467 pacid=23146342 polypeptide=Lus10032467 locus=Lus10032467.g ID=Lus10032467.BGIv1.0 annot-version=v1.0 MALSSQTLDIQGERQSGQDVRAQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDKEVGDGTTSVVIVA AELLKRANDLVRNKIHPTSIISGFRLAMREACKYIDEKLAVKVEKLGKDSLVNCAKTSMSSKLIAGDSDFFANLVVDAVLSVKMTNVRGEIKYPIKGVNI LKAHGKSARDSYLLNGYALNTGRAAQGMPTKVSPARIACLDFNLQKTKMQLGVQVVVTDPRELEKIRQREADMTKERIEKLLKAGANVILTTKGIDDMAL KYFVEAGAIAVRRVRKEDMRHVAKATGATMVSTFADMEGDETFDSLLLGSADQVVEERIADDDVVMIKGTKNTSAVSLILRGANDYMLDEMERALHDALC IVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLAVNAAKDATDLVAKLRAYHHTAQTKADKKHLSSMGLDLSKGTIRN NLEAGVIEPAMSKVKIIQVANEAAIKNLRIDDMIKLVKEDDGQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10032467 [exp]	0	1
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10042966 [exp]	1.0	0.9803
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10027818 [exp]	2.0	0.9702
AT3G12870			unknown protein		Lus10031198 [exp]	3.5	0.9597
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	3.5	0.9694
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10002625 [exp]	3.7	0.9456
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10012633 [exp]	3.9	0.9527
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10012380 [exp]	8.9	0.9453
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10022772 [exp]	11.2	0.9325
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	11.2	0.9444
AT1G09640			Translation elongation factor ...		Lus10007148 [exp]	11.7	0.9489

Compare expression of checked genes

Lus10032467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.