Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18524 1436 / 0 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G17380 204 / 9e-55 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT4G02070 200 / 2e-52 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT4G25540 177 / 3e-45 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT3G24495 176 / 5e-45 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT3G20475 169 / 3e-43 ATMSH5 MUTS-homologue 5 (.1) AT3G24320 84 / 3e-16 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT5G54090 83 / 6e-16 DNA mismatch repair protein MutS, type 2 (.1) AT1G65070 59 / 2e-08 DNA mismatch repair protein MutS, type 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042967 [exp] 1868 / 0 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10010010 [exp] 196 / 4e-51 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10027452 [exp] 178 / 7e-49 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10005743 [exp] 179 / 7e-46 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10007489 [exp] 175 / 2e-45 AT4G17380 1205 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10017724 [exp] 169 / 1e-42 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10028966 [exp] 142 / 8e-36 AT4G17380 413 / 3e-137 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10033095 [exp] 135 / 7e-32 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10025030 [exp] 117 / 1e-26 AT4G02070 350 / 7e-104 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G060000 [exp] 1565 / 0 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.001G156200 [exp] 209 / 3e-56 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.015G142900 [exp] 197 / 8e-52 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.014G121701 [exp] 191 / 1e-49 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.011G089500 [exp] 172 / 3e-44 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1) Potri.006G156314 [exp] 170 / 4e-43 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G159200 [exp] 165 / 2e-41 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.008G191051 [exp] 88 / 4e-19 AT4G02070 294 / 1e-91 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.010G065000 [exp] 84 / 4e-16 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Potri.012G005000 [exp] 78 / 2e-14 AT5G54090 847 / 0.0 DNA mismatch repair protein MutS, type 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01624 [flax] [poplar] MutS_I MutS domain I CL0023 [flax] [poplar] P-loop_NTPase PF00488 [flax] [poplar] MutS_V MutS domain V CL0023 [flax] [poplar] PF05192 [flax] [poplar] MutS_III MutS domain III CL0023 [flax] [poplar] PF05188 [flax] [poplar] MutS_II MutS domain II CL0023 [flax] [poplar] PF05190 [flax] [poplar] MutS_IV MutS family domain IV
Representative CDS sequence Show only first row Show all	>Lus10032469 pacid=23146443 polypeptide=Lus10032469 locus=Lus10032469.g ID=Lus10032469.BGIv1.0 annot-version=v1.0 ATGGCAGATCCCGATTCTCACGAGGCAAACAAATTGCCGGAGCTGAAGCTAGATGCTAAACAGGCTCAGGGTTTTCTTTCTTTCTTCAAAACCCTAGCGC AGGACTCTCGAGCAATTCGGCTCTTTGATAGACGGGACTATTACACCGCTCATGGTGCAAATGCAACTTTTATTGCCAAAACCTATTACCATACGACCAC TGCTTTGCGACAGTTGGGTAATGGGTCTGATTGTCTTTCTAGTGTGAGCATTAGTAGGAATATGTTTGAGACAATTGCTCGAGATGTTCTTCTGGAGAGA ACAGACCACACCCTTGAACTGTATGAGGGCAGTGGGTCTAATTGGAGACTAGTCAAAAGTGGAACTCCTGGGAATCTAGGGAGTTTTGAAGATGTTTTAT TTGCCAACAATGAGATGCAGGATTCTCCTGTCGTTGTTGCGCTCTTCCCAAACTTCCGTGGTGACGAGTGCACAGTGGGTTTAAGCTATGTCGATTTGAA TAAAAGAGTCCTTGGGTTGGCTGAATTTCTTGATGATACTCATTTTACAAATGTTGAATCTGCTCTGGTTTCTCTTGGCTGCAAGGAGTGCCTTTTACCT ATGGAGGCTGGCAAAGGCAGTGAAACTAGAACCTTGCATGATGTTTTTGAAAAATGTGCTGTCATGTTAACAGAGCGAAAGAAAAATGAGTTTAAAGCGA GAGATTTAGTGCAGGATCTAGGGAGGCTTGTCAAAGGTTCCATTGAACCAGTTCGAGATTTGGTTTCTGGGTTTGAATTTGCATCTGTTGCTTTGGGGGC CTTAGTGTCTTACGCAGAATTGCTTGCCGATGAGAGTAACTACGGAAGTTATACCATTAAAAGGTACAATCTTGACAGCTACATGAGGTTGGATTCCGCA GCCATGAGGGCACTGAATGTTCTTGAAAGCAAAACTGATTCAAACAAAACCTTCAGTTTATTTGGTCTAATGAATAGAACTTGTACTGCTGGAATGGGTA AAAGACTGCTTCACATGTGGTTAAAGCAGCCTCTTCTGGATGTAGACGAAATCAACTCCAGGTTGGATTTGGTACAGGCTTTTGTAGAGGATGCCACAGC CCGGCAAAATCTTAGGCAGCATCTTAAAAGAATTGCGGACATCGAGCGACTACTACGTAATCTTGAGAAAAGAAACGCTGCTTTGCATCATATCGTGAAA CTGTATCAGTCTTGCATAAGGCTCCCTTTCATCAAAAGTGCTTTGGAGGATTACGACGGGCAGTTTTCATTATTGATCAAAGAAAGGTATCTGCAGCTGT TGGAGCAATGGATGGATGATGATCACTTAAATAAGTTTATAAGTCTAGTGGACACTGCAGCTGATCTTGATCAGCTTGACAATGGAGAATACATGATATC ACCTGGCTATGATTCTGATCTATGCATATTGAAGGAAGAGCTAGAGTCATTGGAAAAAGAGATCCACGACTTGCATAAGAAAACTGCTAAAGATCTTGAT CTTCCGGTTGATAAGGGGTTGAAGTTGGATAAGGGAACACAGTTTGGCCATGTATTCAGGATTACCAAGAAGGAAGAGCCAAAAATAAGAAAGAAATTGA CATCTCAATTTATTGTCCTTGAAACTCGAAAGGATGGAGTGAAATTCACAAACACAAAACTTAAAAAGCTGGGTGATCGATACCAAAAGGTGGTAGAAGA TTACAAGAACTGTCAAAAAGAGATTGTTAATCGAGTGGTGCAAACTACACTAACTTTTTCAGAGGTGTTTGAATTGTTAGCTGCCAAACTCTCGGAATTA GATGTCTTACTCAGTTTTGCTGATCTTGCTTCTAGTTGTCCCACTCCATATACGAGGCCGGACATCACTCCACCTGATGTGGGAGATATTATATTGGAAG CGAGTAGGCATCCATGTGTGGAAGCTCAGGATTGGGTGAACTTCATACCAAACAATTGCAAACTTCTATGGTTATCCTATTGTTTAACATATCGGGTCAG AGAAACGAGCTGGTTCCAGTTTATCGCAGGGCCTAATATGGGTGGGAAGTCCACATACATTAGACAGATTGGTGTGAATATTCTCATGGCACAAGTGGGT TCTTTTGTTCCATGTGACAAGGCTACCATTTCCGTCCGAGATAGCATTTTTGCTCGTGTGGGTGCTGGTGACTGCCAACTGCGTGGGGTGTCTACTTTTA TGCAAGAAATGCTCGAAACTGCTTCAATACTGAAAGGAGCTACAGACAAGTCACTGATAATCATTGATGAGTTAGGCCGTGGAACTTCCACTTATGATGG ATTTGGTTTAGCATGGGCTATTTGTGAGCATCTTGTCCAAGTGATCAAAGCACCCACTTTATTTGCTACGCATTTTCATGAGCTGACTGCATTAGCTAGT GAGGAAGCAGACTGTACGTCTGATCAAAAGCAAATCGCTGGTGTAGCTAACTACCATGTTAGTGCACACATTGACTCATCAACACGCAAACTCACCATGC TATACAAGGTTGAGAAGGGTGCGTGTGATCAGAGTTTTGGCATTCATGTTGCAGAATTTGCAAATTTCCCTGACAGTGTTGTTGCTCTTGCCCGGGAGAA GGCTTCCGAATTGGAAGGTTTCTCACCAGGTGCTATAACCTCAAACGACACAACGGAGAAGGAGGCTGGCTTGAAAAGGAAGAGAGAGTTTGATGTGGAG GAGACATCGAGAGGGCAAGCAAGAGCACGTCAGTTTCTGAAAGAGTTCTCTGAGTTGCCACTGGAGAAAATGGAGTTTGAGCAAGCCTTGGAAAAGGTAA GGGGGATGAAGGATGAACTAGAGAAGGATGCTGGAAGCTGCGATTGGCTTCAGCAGTTCTTATAA
AA sequence Show only first row Show all	>Lus10032469 pacid=23146443 polypeptide=Lus10032469 locus=Lus10032469.g ID=Lus10032469.BGIv1.0 annot-version=v1.0 MADPDSHEANKLPELKLDAKQAQGFLSFFKTLAQDSRAIRLFDRRDYYTAHGANATFIAKTYYHTTTALRQLGNGSDCLSSVSISRNMFETIARDVLLER TDHTLELYEGSGSNWRLVKSGTPGNLGSFEDVLFANNEMQDSPVVVALFPNFRGDECTVGLSYVDLNKRVLGLAEFLDDTHFTNVESALVSLGCKECLLP MEAGKGSETRTLHDVFEKCAVMLTERKKNEFKARDLVQDLGRLVKGSIEPVRDLVSGFEFASVALGALVSYAELLADESNYGSYTIKRYNLDSYMRLDSA AMRALNVLESKTDSNKTFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVDEINSRLDLVQAFVEDATARQNLRQHLKRIADIERLLRNLEKRNAALHHIVK LYQSCIRLPFIKSALEDYDGQFSLLIKERYLQLLEQWMDDDHLNKFISLVDTAADLDQLDNGEYMISPGYDSDLCILKEELESLEKEIHDLHKKTAKDLD LPVDKGLKLDKGTQFGHVFRITKKEEPKIRKKLTSQFIVLETRKDGVKFTNTKLKKLGDRYQKVVEDYKNCQKEIVNRVVQTTLTFSEVFELLAAKLSEL DVLLSFADLASSCPTPYTRPDITPPDVGDIILEASRHPCVEAQDWVNFIPNNCKLLWLSYCLTYRVRETSWFQFIAGPNMGGKSTYIRQIGVNILMAQVG SFVPCDKATISVRDSIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVIKAPTLFATHFHELTALAS EEADCTSDQKQIAGVANYHVSAHIDSSTRKLTMLYKVEKGACDQSFGIHVAEFANFPDSVVALAREKASELEGFSPGAITSNDTTEKEAGLKRKREFDVE ETSRGQARARQFLKEFSELPLEKMEFEQALEKVRGMKDELEKDAGSCDWLQQFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10032469 [exp]	0	1
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10004012 [exp]	1.0	0.9696
AT1G29630			5'-3' exonuclease family prote...		Lus10011991 [exp]	1.4	0.9592
AT1G75150			unknown protein		Lus10010814 [exp]	2.0	0.9565
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10042967 [exp]	2.8	0.9501
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10015820 [exp]	6.2	0.9378
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10009446 [exp]	6.3	0.9538
AT4G16807			unknown protein		Lus10010995 [exp]	7.1	0.9168
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	7.1	0.9568
AT1G79890			RAD3-like DNA-binding helicase...		Lus10011447 [exp]	7.3	0.9464
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10004453 [exp]	8.4	0.9502

Compare expression of checked genes

Lus10032469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.