Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75290 217 / 6e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75280 213 / 2e-66 NmrA-like negative transcriptional regulator family protein (.1) AT4G39230 204 / 5e-63 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 202 / 3e-62 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 196 / 6e-60 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 190 / 9e-58 ATPRR1 pinoresinol reductase 1 (.1) AT1G19540 188 / 6e-57 NmrA-like negative transcriptional regulator family protein (.1) AT4G13660 164 / 1e-47 ATPRR2 pinoresinol reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035058 [exp] 338 / 4e-115 AT1G75290 212 / 2e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042968 [exp] 272 / 4e-90 AT1G75280 100 / 2e-24 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 231 / 1e-73 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 228 / 2e-72 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 228 / 3e-72 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 229 / 8e-71 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 220 / 3e-69 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 219 / 5e-69 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10023558 [exp] 206 / 1e-63 AT4G34540 405 / 7e-143 NmrA-like negative transcriptional regulator family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G050200 [exp] 454 / 2e-160 AT1G75290 257 / 6e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G116500 [exp] 399 / 6e-139 AT1G75290 242 / 3e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G129800 [exp] 395 / 4e-137 AT1G75290 241 / 2e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G118100 [exp] 219 / 6e-69 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 213 / 8e-67 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 213 / 8e-67 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 206 / 7e-64 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 197 / 2e-60 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 194 / 7e-59 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G036500 [exp] 187 / 1e-56 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10032470 pacid=23146260 polypeptide=Lus10032470 locus=Lus10032470.g ID=Lus10032470.BGIv1.0 annot-version=v1.0 ATGAAAAGCGTTAATGGGTTGGACGTCCCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGGCGGACCATGATCATTGGTTCAACCGGGTGCATTGGTTGGT ACATAGCCGATGCATGCCTACAATCCGGACGGCCCACTTACCTTCTAGTCCGTCAAGGACCAGGATTCATCAACTCATCATCCTCAAAAGCTTCCAAGAT CAAGCCCCTCCTGGACAAAGGTGCCACCATCCTTCACGGATGTATAAAGGATGGAGAGCTGATGGAAAAGATGATAAGAGAGAACAAGATTGAGGTTGTG ATATCAGCTGTAGGAGGGGAAAGTGTGTGGGACCAAATCCACCTTGTCAACGCCATTAAAGCAGTTGGAGCTCTTGTTAAGAGGTTCGTGCCATCGGAGT TTGGGCACGATATAGACAGAGCGGAGCCAGTGGAGCCAGGGTTGAGCATGTACAAGGAGAAGAGGATGGTTAGGAGGTTCATAGAAGAATGTGGAGTCCC ATTCACTTATATTTGCTGCAACTCCATCGCCGCTTGGCCTTACCACGACAATGCTCACCCGTCCGATCTCCTCCCTCCTTTGGACCGCGTCCATATCTAC GGTGATGGCACTGTCCAAGCGTATTTTATTGCTGGGACTGATATTGGCAAGTTCACAATGAGAGCAGTTGAAGATGCTCGCACTCTCAACAAAACCCTCC ATTTCCAACCAAAATCCAATCTTCTAAACATCAACCAGCTTGCCCACATCTGGGAAGCTCAACTCGGACGCGACCTTCCGCGAGTCACCATCACCGAGGA TGACTTACTTTCCGCTGCCAGAGAAATGCGAATCCCGCAGAGCGTTGTGGCGGCCCTAACCCACGACATTTTCATAAACGGTTGCCAGGTCAACTACAAC CTCAACCAGCCAACCGACGTTGAAGCCTGCTCCCTCTATCCAGATTTGTCTTTCCGAACTGTCGATGACTGCTTTAAAGAGTTCTTAACGAGGGTTGATG ATGATGACGATGAAGCAACGAAACATGCCACCACCAAGCCTCCTCCCTCCAGCAGCAGTACCAAAGGCAGTATCATATTGGCAAGTTCCAAGACGGAAGT TGTTTCCATAACAGCATAA
AA sequence Show only first row Show all	>Lus10032470 pacid=23146260 polypeptide=Lus10032470 locus=Lus10032470.g ID=Lus10032470.BGIv1.0 annot-version=v1.0 MKSVNGLDVPAAAAAAAAGGRTMIIGSTGCIGWYIADACLQSGRPTYLLVRQGPGFINSSSSKASKIKPLLDKGATILHGCIKDGELMEKMIRENKIEVV ISAVGGESVWDQIHLVNAIKAVGALVKRFVPSEFGHDIDRAEPVEPGLSMYKEKRMVRRFIEECGVPFTYICCNSIAAWPYHDNAHPSDLLPPLDRVHIY GDGTVQAYFIAGTDIGKFTMRAVEDARTLNKTLHFQPKSNLLNINQLAHIWEAQLGRDLPRVTITEDDLLSAAREMRIPQSVVAALTHDIFINGCQVNYN LNQPTDVEACSLYPDLSFRTVDDCFKEFLTRVDDDDDEATKHATTKPPPSSSSTKGSIILASSKTEVVSITA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75290			NAD(P)-binding Rossmann-fold s...		Lus10032470 [exp]	0	1
AT3G22060			Receptor-like protein kinase-r...		Lus10039698 [exp]	13.6	0.7352
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10013067 [exp]	25.5	0.7153
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10016413 [exp]	28.7	0.7173
AT3G22060			Receptor-like protein kinase-r...		Lus10039699 [exp]	43.6	0.7040
AT5G51890			Peroxidase superfamily protein...		Lus10031664 [exp]	44.5	0.7122
AT2G34930			disease resistance family prot...		Lus10006946 [exp]	67.7	0.6655
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10015760 [exp]	73.5	0.6885
AT4G30040			Eukaryotic aspartyl protease f...		Lus10004064 [exp]	76.0	0.6829
AT5G10530			Concanavalin A-like lectin pro...		Lus10033782 [exp]	95.2	0.6717
AT2G15780			Cupredoxin superfamily protein...		Lus10025269 [exp]	97.5	0.6449

Compare expression of checked genes

Lus10032470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.