Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18470 682 / 0 Transmembrane Fragile-X-F-associated protein (.1.2) AT1G73950 655 / 0 Transmembrane Fragile-X-F-associated protein (.1) AT1G68820 602 / 0 Transmembrane Fragile-X-F-associated protein (.1) AT4G39050 58 / 9e-09 Kinesin motor family protein (.1) AT2G21380 57 / 1e-08 Kinesin motor family protein (.1) AT3G12920 52 / 3e-07 BRG3 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) AT2G35330 51 / 2e-06 RING/U-box superfamily protein (.1.2) AT3G06140 47 / 1e-05 RING/U-box superfamily protein (.1) AT5G19080 46 / 4e-05 RING/U-box superfamily protein (.1) AT1G63900 45 / 8e-05 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042969 [exp] 881 / 0 AT1G18470 698 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10021710 [exp] 555 / 0 AT1G18470 687 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10035057 [exp] 545 / 0 AT1G68820 639 / 0.0 Transmembrane Fragile-X-F-associated protein (.1) Lus10027994 [exp] 62 / 4e-10 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10017969 [exp] 58 / 1e-08 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10008163 [exp] 55 / 4e-08 AT1G63900 533 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10028790 [exp] 56 / 5e-08 AT4G39050 1242 / 0.0 Kinesin motor family protein (.1) Lus10004557 [exp] 52 / 4e-07 AT2G35330 473 / 2e-162 RING/U-box superfamily protein (.1.2) Lus10000899 [exp] 52 / 8e-07 AT2G35330 463 / 2e-158 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G050300 [exp] 738 / 0 AT1G18470 748 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Potri.012G060100 [exp] 734 / 0 AT1G18470 673 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Potri.008G116400 [exp] 600 / 0 AT1G68820 667 / 0.0 Transmembrane Fragile-X-F-associated protein (.1) Potri.010G129932 [exp] 114 / 2e-30 AT1G68820 120 / 5e-33 Transmembrane Fragile-X-F-associated protein (.1) Potri.004G161100 [exp] 59 / 5e-09 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.009G122100 [exp] 57 / 2e-08 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.001G144200 [exp] 54 / 2e-07 AT2G35330 780 / 0.0 RING/U-box superfamily protein (.1.2) Potri.003G090000 [exp] 54 / 2e-07 AT2G35330 726 / 0.0 RING/U-box superfamily protein (.1.2) Potri.014G138000 [exp] 52 / 6e-07 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.008G198300 [exp] 49 / 7e-06 AT4G03000 338 / 8e-103 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10269 [flax] [poplar] Tmemb_185A Transmembrane Fragile-X-F protein
Representative CDS sequence Show only first row Show all	>Lus10032471 pacid=23146403 polypeptide=Lus10032471 locus=Lus10032471.g ID=Lus10032471.BGIv1.0 annot-version=v1.0 ATGACGAGCTGGAGAAGAGTGTTGAAGTCTGCGCAGGCCCTAGCTGCCCACGTCCTCCTGTTTACTTTTACTCTTGTGCTGGTGCTTAAGCTCGAGCGTT TCTTCTACTGCTCTTGGTGGTTGGTTTTCTTCCCTCTGTGGGTCTTCCATGGGGTTGTTGCTCGAGGGAGGTTTTCGTTGCCCGCTCCATCAGTTCCACA CAATCGCCATTGGGCTCCATGTCATGCAGTAGTTGCAACACCCTTGCTTACAGCATTTGAGCTCCTCCTATGCATTTATCTCGAGAGTGCTGACGTTCAT GGTATCCCTGCTGTAGACTTGAAGATTGTATTCCTTCCGCTGTTGCTGTTCGAAATAACTATATTGGTTGATAATTTCAGAATGTGTCGAGCTCTTATGC CGGGTGATGAAGATAGCATGAGTGATGAAGCAATATGGGAAACATTGCCTCACTTCTGGGTTGCAATCTCAATGGTCTTCTTCTTAGCTGCTACAGTTTT CACCGTTCTCAAGCTATCGGAATGCTTTGCCTTCCTTGTTTGCACTAGGTGGTCAAATCCAGTCATTCATAGAACTACTCAGTCAAGGGAAGCTGGTTCA TCCTCATCTGCCATTAGATATCTTGACTGGAACAGTGGCTTACTGCTTTCTCCAGAGGAGAATAATGAACAAGAGAGAATGTGTGGTTTGCAAGACATTG GTGGCCATATCATGAAGATTCCATTGATTTGTTTCCAAGTACTCCTTTGCATGCGTTTACAGGGAACACCCGCTGGAGCCAGAAACATTCCCCTGTCTGT TATCTTCTGTCCTCTGTTCCTCCTTCAAGGTGCTGGTGTTCTACTTGCTGCCTCAAAATTGGTGGAGAAACTTATTCTCTTGTTGCGGAGTGAAGCTGGT GCTGGAAGGTACTTCAGATTTTCATCGAGATTTCATGATTCCTTGGGGTTCTTGCGACATGGTTCCAGACTAATGGGGTGGTGGTCCATTGATGAAGGAA GTCGAGAGGAGCAAGCCCGACTGTACCGTGAAGGAGCTGCAGGATACAATACTTTTTCTGGTTATCCTCCCGAGATAGTAAAAAAAATGCCTAAAAAGGA TCTTGCTGAAGAGGTTTGGAGGCTGAAGGAAGCCATTGGAGAGAAAACAGAAGTAACCAGATACAGTCAGCAGGAGTTTGAGAGGCTGCAAAATGAGAAA GTGTTATGCAGGGTTTGCTTTGAAGGCGAGATCAATATAGTCCTACTTCCCTGTAGGCATCGCATCCTCTGCAGCACGTGCTGTGAGAAGTGTAAGAAGT GCCCAATCTGCAGGGTTCCCATCGAGGAGCGGTTGTCGGTGTACGATGTATAG
AA sequence Show only first row Show all	>Lus10032471 pacid=23146403 polypeptide=Lus10032471 locus=Lus10032471.g ID=Lus10032471.BGIv1.0 annot-version=v1.0 MTSWRRVLKSAQALAAHVLLFTFTLVLVLKLERFFYCSWWLVFFPLWVFHGVVARGRFSLPAPSVPHNRHWAPCHAVVATPLLTAFELLLCIYLESADVH GIPAVDLKIVFLPLLLFEITILVDNFRMCRALMPGDEDSMSDEAIWETLPHFWVAISMVFFLAATVFTVLKLSECFAFLVCTRWSNPVIHRTTQSREAGS SSSAIRYLDWNSGLLLSPEENNEQERMCGLQDIGGHIMKIPLICFQVLLCMRLQGTPAGARNIPLSVIFCPLFLLQGAGVLLAASKLVEKLILLLRSEAG AGRYFRFSSRFHDSLGFLRHGSRLMGWWSIDEGSREEQARLYREGAAGYNTFSGYPPEIVKKMPKKDLAEEVWRLKEAIGEKTEVTRYSQQEFERLQNEK VLCRVCFEGEINIVLLPCRHRILCSTCCEKCKKCPICRVPIEERLSVYDV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10032471 [exp]	0	1
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10042969 [exp]	1.4	0.9676
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10008686 [exp]	2.4	0.9623
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026142 [exp]	3.9	0.9428
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10008294 [exp]	4.1	0.9292
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	4.9	0.9466
AT1G70160			unknown protein		Lus10010721 [exp]	5.7	0.9356
AT3G26100			Regulator of chromosome conden...		Lus10006242 [exp]	6.5	0.9487
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10018857 [exp]	6.9	0.9349
AT5G09850			Transcription elongation facto...		Lus10002088 [exp]	7.0	0.9398
AT5G45360			F-box family protein (.1)		Lus10022369 [exp]	7.1	0.9361

Compare expression of checked genes

Lus10032471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.