Plant FIBer expression Database

Lus10032474 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73930 850 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042970
[exp]
1166 / 0 AT1G73930 955 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G049900
[exp]
912 / 0 AT1G73930 865 / 0.0 unknown protein
Potri.012G060200
[exp]
900 / 0 AT1G73930 847 / 0.0 unknown protein
Potri.001G289250
[exp]
55 / 1e-09 AT1G73930 55 / 8e-11 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0330 AVL9 PF07792 Afi1 Docking domain of Afi1 for Arf3 in vesicle trafficking
Representative CDS sequence
>Lus10032474 pacid=23146293 polypeptide=Lus10032474 locus=Lus10032474.g ID=Lus10032474.BGIv1.0 annot-version=v1.0
ATGAGTCGATTGCCATCCTTTTCCTTAAAATCAGAATCTAGCATCAAGGTTGATCCAGAGTCCCTTCAGCAATGGGTTGTTGCATTTTGTATCATCAGAT
TTGATCTTGAGCAAGGTCAGCTGATTGAAGAGTGTTATCCATCTGGTTCTCTGTCAAGTGAGGAGGAACTGGATGTTGCCTTCAGTTCCTTTCCGGATTC
TGTTTCTCAACACCAGAACCGTTCAAGCATTCATGATTGCATGTTCTTTTTCCGTGTCCAGAGGCGTAAAGGCTCTAAACGGAATGATGTGAAGTCATCG
GACATAGAACTGGCGAAATCCAAGCCTAGCAATGATGTTAGAAGCAATAAATACTTGTATGGGTATGTATTCAACCGGCAGAGACATGACGAAAGGTTAA
AGCGGGGAGGAGAACAGAAGTCCGTAGTTATATTATCTCACAGCCCTTATTCTTCCGTGTTCAGACCATTGTTACAGATTATGGGTCCATTATATTTTGA
CATTGGAAACTTGGCGCTTGAGCATATTGCTACATATGTGTCTATATGGCCTTCCCCTGTACCTGGTAAGCCAATGGAGCTTCCTATTGGTAATGCCACA
CTCAAAGTGAACCTTCCTCCTGCTCATAGCTTACCTTTGGAAAAAGGATTGCACGAGGAATCGTCTTCATCGATGGCTCCTCTACTTCCAACTAATCAAT
CAATCCCACAGGGGCTTTTCCATGATTCCGATGTATTTGGTATATTCCGTGGGATTCTATTACAACTGTGGGTGTTATGGGAATTATTGTTGATTGGTGA
ACCTATTCTCGTCATAGGACCTACTCCCCCTCAATGTAGTGAGGCAGTTGCAAGTCTTGTCAGTTTGGTTGCGCCATTGTTGTTCAGTGTTGATTTTAGG
CCTTATTTTACGATTCATGATCCAGAATTTGCTCGATTGAATTCTCTGCAAGAAGGTGACACTTTTCCTCCAATGGTTTTGGGTGTGACGAATCTGTTCT
TCCTCAAGTCTCTTCGTAATGTTCGCCATGTTGTGTCAGTTGGAAGCCCAGCAGGCATATCTAACCGTACGTCCATTTCAAATAGGTTTTCTTCCGGTGG
GTCTATGAGACAAGAGGGGTCTGGTCTTCAGCAGCTATCTTTTAGAAGGTTTTCTGCGTCAAGTCTCTTAAATGCCGTTAAGCTTACGAGAGAAGGGCCT
CTTTCCCTTATGACTGAGCATAAGGAAGCCATTTGGACCAGTTATGCTGCAGTAACTAAGCCAGATACATCAATTCTTAACCGGCTTATTGATGCTGGGA
TGTCCCCAAGGGTTGAGGAGTCCATGTCAGTTGTAAACAATGAGATATTGCGCCGGCATTTCTTGGAGCTTACGACTAACTTCTTGGCTCCTTTTGGCCC
GTATTTTAGGGCAACAACACCATGTGAAGGATCTTCTCCATTTCTTGATCCACCTCCTCTCCCTCCCTTTAACGTCGATGAATTTTTGACAAGTTTATCA
GCAAGAGGTGTAGGGAAGTTTCTATCAAAGCGAATGCGATCAAATTGGATGGATTTATACAGGCGGTTCCTGAAAGGACCAAACTTTATGCCATGGTTTC
AGAGAAGGCGTGATGTTGCAGAACAAGAGCAACATAGGCTATGGAGGCAAGCAAGGATGACTACGGATATAAGATTATTCATATCAACGATGTCTGAACT
GGAAATTGTAGATTCCTTTAATGCGATTGAGAGGCACCTGCTGGTAGAAAATCAGATGGAGCAGCTTGGAAAGGCCACTCTGAACTGTGCAAGCATTTGC
TCAAAGCTGAGAAAAGATCTGCAGGTTGTGTTCAATGTGCTTCCCAAGGATATGCAGCAGCTATTGCTCATGAACCCGGAAAAGGCAGCTCTTTTGGATG
ATTCTACGAGACATGCAGGCGAGGAGAAAGCTTCTGCTTCCCCCTAG
AA sequence
>Lus10032474 pacid=23146293 polypeptide=Lus10032474 locus=Lus10032474.g ID=Lus10032474.BGIv1.0 annot-version=v1.0
MSRLPSFSLKSESSIKVDPESLQQWVVAFCIIRFDLEQGQLIEECYPSGSLSSEEELDVAFSSFPDSVSQHQNRSSIHDCMFFFRVQRRKGSKRNDVKSS
DIELAKSKPSNDVRSNKYLYGYVFNRQRHDERLKRGGEQKSVVILSHSPYSSVFRPLLQIMGPLYFDIGNLALEHIATYVSIWPSPVPGKPMELPIGNAT
LKVNLPPAHSLPLEKGLHEESSSSMAPLLPTNQSIPQGLFHDSDVFGIFRGILLQLWVLWELLLIGEPILVIGPTPPQCSEAVASLVSLVAPLLFSVDFR
PYFTIHDPEFARLNSLQEGDTFPPMVLGVTNLFFLKSLRNVRHVVSVGSPAGISNRTSISNRFSSGGSMRQEGSGLQQLSFRRFSASSLLNAVKLTREGP
LSLMTEHKEAIWTSYAAVTKPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTTNFLAPFGPYFRATTPCEGSSPFLDPPPLPPFNVDEFLTSLS
ARGVGKFLSKRMRSNWMDLYRRFLKGPNFMPWFQRRRDVAEQEQHRLWRQARMTTDIRLFISTMSELEIVDSFNAIERHLLVENQMEQLGKATLNCASIC
SKLRKDLQVVFNVLPKDMQQLLLMNPEKAALLDDSTRHAGEEKASASP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G73930 unknown protein Lus10032474
[exp]
0 1
AT3G60240 CUM2, EIF4G CUCUMOVIRUS MULTIPLICATION 2, ... Lus10028156
[exp]
3.2 0.9120
AT5G05680 EMB2789, MOS7 MODIFIER OF SNC1,7, EMBRYO DEF... Lus10028296
[exp]
3.5 0.9055
AT2G46520 cellular apoptosis susceptibil... Lus10030241
[exp]
5.3 0.9098
AT3G55410 2-oxoglutarate dehydrogenase, ... Lus10005961
[exp]
5.5 0.9096
AT1G73180 Eukaryotic translation initiat... Lus10004803
[exp]
6.0 0.9020
AT3G09040 Pentatricopeptide repeat (PPR)... Lus10009913
[exp]
6.2 0.8902
AT1G73930 unknown protein Lus10042970
[exp]
7.3 0.8649
AT1G76950 PRAF1 Regulator of chromosome conden... Lus10028600
[exp]
8.7 0.8885
AT5G59740 UDP-N-acetylglucosamine (UAA) ... Lus10040866
[exp]
9.9 0.8898
AT4G31590 ATCSLC5, ATCSLC... CELLULOSE-SYNTHASE LIKE C5, Ce... Lus10026923
[exp]
10.4 0.8913

Lus10032474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.