Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73920 871 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G18460 866 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT5G14180 89 / 1e-18 MPL1 Myzus persicae-induced lipase 1 (.1) AT2G15230 72 / 3e-13 ATLIP1 lipase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042973 [exp] 811 / 0 AT1G73920 498 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10032477 [exp] 557 / 0 AT1G73920 544 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042972 [exp] 391 / 3e-133 AT1G18460 335 / 5e-112 alpha/beta-Hydrolases superfamily protein (.1) Lus10015159 [exp] 99 / 1e-21 AT5G14180 409 / 2e-141 Myzus persicae-induced lipase 1 (.1) Lus10023171 [exp] 97 / 4e-21 AT5G14180 358 / 3e-121 Myzus persicae-induced lipase 1 (.1) Lus10031523 [exp] 96 / 9e-21 AT5G14180 410 / 1e-141 Myzus persicae-induced lipase 1 (.1) Lus10038378 [exp] 81 / 6e-16 AT5G14180 377 / 2e-129 Myzus persicae-induced lipase 1 (.1) Lus10038401 [exp] 81 / 8e-16 AT5G14180 383 / 4e-131 Myzus persicae-induced lipase 1 (.1) Lus10041571 [exp] 79 / 3e-15 AT5G14180 525 / 0.0 Myzus persicae-induced lipase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G060600 [exp] 994 / 0 AT1G73920 917 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.014G159900 [exp] 116 / 1e-27 AT5G14180 421 / 9e-146 Myzus persicae-induced lipase 1 (.1) Potri.014G159800 [exp] 103 / 2e-23 AT5G14180 422 / 3e-146 Myzus persicae-induced lipase 1 (.1) Potri.014G159700 [exp] 86 / 1e-17 AT5G14180 441 / 5e-154 Myzus persicae-induced lipase 1 (.1) Potri.001G332300 [exp] 85 / 2e-17 AT5G14180 533 / 0.0 Myzus persicae-induced lipase 1 (.1) Potri.009G094900 [exp] 75 / 4e-14 AT2G15230 564 / 0.0 lipase 1 (.1) Potri.017G069700 [exp] 51 / 2e-06 AT5G14180 374 / 4e-128 Myzus persicae-induced lipase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF04083 [flax] [poplar] Abhydro_lipase Partial alpha/beta-hydrolase lipase region
Representative CDS sequence Show only first row Show all	>Lus10032476 pacid=23146352 polypeptide=Lus10032476 locus=Lus10032476.g ID=Lus10032476.BGIv1.0 annot-version=v1.0 ATGTATGCGTGGGGATCATCTGTATATAATGCAATTCACCTAGTTCAGTCGGTGAAAACATTAACCTATGAGTCCTTGCACAATGTTGTGAGGCTGATAG ATGGAGTTTCGGCCCTTCTGTTGACTGTTTTGCCTGGGAAGGCTAATATTCTTGAAGGTCTTCATGGCTGGGAGCTTAGGCCAGCTTTTCGTGGACCCCG TCTGCCTCATTGGATGGAGAATGGGGTATCCTCCTTCAACAAATTTGTTCATGAACTCTCAGTGGATTCGGATATTGATACTTCAGGTTCTGATTATTCT TCAGCTGAAGAAGATGATGAAATGTATCCTCCATCACCAATGTCGTATGGTTCCCGAGTTTCTAATGCAATTCCTTTCAGAAGGAAACGTGGACTCTTAA TTGGATGGGTTGCATCTATAATCTCTTGGATCATTACACCATTAAAGATTTTACTTGGATTTCCGCTTTTTTTCTATGGAATATTTTGCACCAAAAGGCC AACAAATCCTCACCAAGAAGAAACCTACCATGATTCTCAGTCAACTCCCATCAAGAAAGTACAATCTCTTAAGGATCTGATCATTCACCGTACTACTGAC AAGAGACGTGGAGTCATTGAGGATCTTCATCTAGGAATAGAGATCAGCATTGAAGCTGTATTTGACTTTTTTCACAAAGCGACAAGATTTTTTCTTTCAC CAACAAAGGTTCTAAAAGCTGTCTATCATTGGGTTTTTTACGACAATTACAACCGTGAAGATATCAATAGTGATGTTTTGGACACCAATGTGCCTGCAAC TGCACTTGGAGACGATGATCCAGCTCCTAGAGAGAGGAAAGCTACAACTCAAGGGGCCTTAAACACTGATGCTCGTACATGTCAGGATGTCATAACAGAA CTAGGGTACCCATATGAAGCAATTCGCGTGATAACCTCTGACGGATATGTACTCCTTTTGGAGAGAATTCCAAGACGCGACTCGCGCAAGGCGGTTTACC TTCAGCATGGGGTCATGGATTCGTCGATGGGGTGGGTATCCAATGGTGTAGTTGGATCTCCTGCATTTGCAGCATATGATCAAGGGTTTGATGTTTTCCT TGGAAATTTACGAGGGTTGGTTTCTAGAGAGCACGTTGACAAGAACATTTCTTCCCGACAGTATTGGTGCTATTCCATTAACGAACACGGGACAGCGGAT ATACCAGCGATGGTTCAAAAAATTCACGACGTCAAAACTGCAGAACTGAGGATTAATGGACTTGAATCCGAGGAAGAGTCCAGTGGGGGGCAGCCTTACA AACTTTGTGCCATCAGTCACAGCTTAGGCGGAGCTGCCATGATCATGTATGTGGTAACAAGTCGAATTGAAGAGAAGCCTCACAGACTATCCAAAATGAT TTTGCTATCTCCTGCTGGCTTCCACCAGGATTCTAACCTTGTCTTTACAACCATGGAGCATCTTTTCCTTATGATGGCCCCTATTCTATCACGGTTCATC CCGGCCTTCTACATACCCACAAGATTCTTCCGTATGCTGTTAAATAAGTTGGCTCGGGATTTCAACAACTACCCAGCAGTTGGAGGGCTGGTCCAAACCC TAATGAGCTATGTAGTTGGCGGAGATAGCTCGAATTGGGTAGGAGTTTTGGGTCTTCCCCACTACAACATGAATGATATGCCTGGGGTTTCGTTCTTCGT AGCTCTTCACCTTGCCCAGATGAAGCGTGCAAGAAAATTCATAATGTACGATTACGGAAATCGTGCCGCAAACATGGAGTATTATGGATCTGCAGAGCCG TTGGATCTAGGAGAATACTATGGGCTGATTGATATCCCTGTGGACTTAGTTGCTGGGAAGAAGGATAACGTGATTCGGCCTTCAATGGTTATAAAGCATT ATAAGTTGATGAAGGAAGCCGGAGTGGAGGTGTCGTATAATGAATACGAGTACGCTCATCTGGACTTCACATTCTCTCACAGGGAGGAACTTTTAGCCTA TGTGATGTCTCGAATGATGCTGGTAGAGAAGAAACCGTCGAATCATAAGTCTTTAAAGCTGAAGAAGAAAGAAAAGGTGAATTCGTAA
AA sequence Show only first row Show all	>Lus10032476 pacid=23146352 polypeptide=Lus10032476 locus=Lus10032476.g ID=Lus10032476.BGIv1.0 annot-version=v1.0 MYAWGSSVYNAIHLVQSVKTLTYESLHNVVRLIDGVSALLLTVLPGKANILEGLHGWELRPAFRGPRLPHWMENGVSSFNKFVHELSVDSDIDTSGSDYS SAEEDDEMYPPSPMSYGSRVSNAIPFRRKRGLLIGWVASIISWIITPLKILLGFPLFFYGIFCTKRPTNPHQEETYHDSQSTPIKKVQSLKDLIIHRTTD KRRGVIEDLHLGIEISIEAVFDFFHKATRFFLSPTKVLKAVYHWVFYDNYNREDINSDVLDTNVPATALGDDDPAPRERKATTQGALNTDARTCQDVITE LGYPYEAIRVITSDGYVLLLERIPRRDSRKAVYLQHGVMDSSMGWVSNGVVGSPAFAAYDQGFDVFLGNLRGLVSREHVDKNISSRQYWCYSINEHGTAD IPAMVQKIHDVKTAELRINGLESEEESSGGQPYKLCAISHSLGGAAMIMYVVTSRIEEKPHRLSKMILLSPAGFHQDSNLVFTTMEHLFLMMAPILSRFI PAFYIPTRFFRMLLNKLARDFNNYPAVGGLVQTLMSYVVGGDSSNWVGVLGLPHYNMNDMPGVSFFVALHLAQMKRARKFIMYDYGNRAANMEYYGSAEP LDLGEYYGLIDIPVDLVAGKKDNVIRPSMVIKHYKLMKEAGVEVSYNEYEYAHLDFTFSHREELLAYVMSRMMLVEKKPSNHKSLKLKKKEKVNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10032476 [exp]	0	1
AT5G55600			agenet domain-containing prote...		Lus10016606 [exp]	2.0	0.8562
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Lus10023477 [exp]	2.6	0.8435
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10011301 [exp]	4.9	0.8484
AT4G30560		ATCNGC9	cyclic nucleotide gated channe...		Lus10022155 [exp]	5.7	0.8536
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10002950 [exp]	6.3	0.8382
AT4G32250			Protein kinase superfamily pro...		Lus10001499 [exp]	6.6	0.8542
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10024653 [exp]	7.7	0.8474
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	10.1	0.8461
AT3G54850		ATPUB14	plant U-box 14 (.1)		Lus10038699 [exp]	10.2	0.8175
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10004434 [exp]	12.2	0.8084

Compare expression of checked genes

Lus10032476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.