Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18460 531 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT1G73920 529 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G14180 49 / 1e-05 MPL1 Myzus persicae-induced lipase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032476 [exp] 551 / 0 AT1G73920 881 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042972 [exp] 339 / 4e-114 AT1G18460 335 / 5e-112 alpha/beta-Hydrolases superfamily protein (.1) Lus10042973 [exp] 205 / 2e-59 AT1G73920 498 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042974 [exp] 59 / 5e-11 AT1G73920 58 / 6e-12 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10023171 [exp] 53 / 5e-07 AT5G14180 358 / 3e-121 Myzus persicae-induced lipase 1 (.1) Lus10038401 [exp] 51 / 1e-06 AT5G14180 383 / 4e-131 Myzus persicae-induced lipase 1 (.1) Lus10038378 [exp] 48 / 2e-05 AT5G14180 377 / 2e-129 Myzus persicae-induced lipase 1 (.1) Lus10027861 [exp] 45 / 0.0001 AT2G15230 438 / 2e-152 lipase 1 (.1) Lus10002808 [exp] 45 / 0.0001 AT2G15230 551 / 0.0 lipase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G060600 [exp] 525 / 1e-179 AT1G73920 917 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.014G159900 [exp] 60 / 2e-09 AT5G14180 421 / 9e-146 Myzus persicae-induced lipase 1 (.1) Potri.014G159800 [exp] 55 / 7e-08 AT5G14180 422 / 3e-146 Myzus persicae-induced lipase 1 (.1) Potri.014G159700 [exp] 0 / 1 AT5G14180 441 / 5e-154 Myzus persicae-induced lipase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032477 pacid=23146247 polypeptide=Lus10032477 locus=Lus10032477.g ID=Lus10032477.BGIv1.0 annot-version=v1.0 ATGCAACGATTTGTTGATACCACGCTTGCTGTTACAAAAGAGTCAGTGAAGACATTTACTTATGAGTCATTACACAACATTGTGAGATTAATAAACGGGT TTTCGGCTCTTTTATTAACTATTTTGCCTGGAAAAGCTAAGATTCTTGAAGGAATTCAAGGTTGGGAACTTAGACCAACTGTGCGCGGTCCTCGATTTCC TCGTTGGATGAAGAAAAATGGAGTATCTTCATTCAACAAATTTGTTCACGAACTCCCAACGGATTCGGACGAAGATGGTGAAACTTCGGATAATGGCCCA ATAATAAATGAGGAAGATGAAGGAATCTATCCTGGTTCCCCATTATATCGTCCTCGTCCTGCTAAAATTCGTACAAGATGCAAACAAAGGAGCAACAATG GCGGTTTCAGAGGGCTAATTACCCTCATATTCTCGTGGGTTCAAATTCCTTTCAAGTTTATGGTAAAGATACCGCTTTTCATTCTTGGTATACTTCACAA AAGGAAGATGCCAACTTGGACCCATAAAAATGATTATAAGCAACAATCTTGTTCTTCTCCATGTTCAACGCCTACCCCAAAAGGGCAAGCCTCAAGGGAC CAAGTCATTCATCGTGCTACTGATAAGAGGCGTGGAGTTATTGAGTCACATAGGGGCTTCTATACCCCGTTTGGTACTCCCTATGGTACAAATACCCCCC ATGTAACTGCCAGCATCAATGAAGCGGCGTCTCAATCATTGGCGCCTAGGTGGTCGTCGCGTAAGGGGTATCCGTACCCCAGAGCGATGTGGGTATCAAA TGGAGTAGTTGGATCTCCAGCATTTGCAGCATATGATCAAGGATTTGATGTTTTCCTTGGAAATTTCCGAGGCCTGGTTTCCAGGGAACATGTGAACAAG AACATTTCGTCCCACAAGTATTGGCGGTATTCAATCAACGAGCACGGAACAGAAGACATCCCAGCAATGATCGAAAAGATCAACCAGATCAAAACTAGAG AGTTATCAAACACCAAACTCCATAACAATAACAACAACAAAGAAACCAATGACGATTCTGCCCCCCAACCTTACAAGCTCTGCGCAATCTCCCACAGTCT AGGAGGCGCCGCAATGATAATGTACACAGTAACACAACGCCTCAAGAAAAACCCCCACAGACTATCCAGACTCATCCTCCTCTCCCCGGCAGGATTCCAC GACGACTCGAATCTCGTATTCACAACCGTCGAATATCTCTTCCTACTAGCAGCCCCCGTACTGTCAAAACTCATCCCGGCCTTCTACATCCCCACGCGCT TCTTCCGCATGTTGCTCAACAAGCTAGCTCGCGACTTCTACAACTACCCGGCCGTGGGAGGGTTAGTGCAGACATTAATGTCGTACGTTGTCGGAGGGGA CAGCTCGAATTGGGTCGGAGTGCTCGGGTTGCCCCACTACAACATGAACGATATGCCGGGCATTTCGTTCTTCGTGGCGCATCACTTAGCGCAGATGAAG CATGCGGGGAAGTTTATAATGTATGACTACGGGAGCGAGTCGAAGAATACAGAGATTTATGGATCGGCCGAGCCGTTGGATCTTGGGAAGTATTATAAGT GGATCGATATTCCGGTTGATCTTGTGGCTGGGAAGAAGGATAATGTGATCCGGCCGTCGATGGTGGTGAGGCATTATAGGTTGATGAAGGATGCCGGTGT TAGAGTGCTGTATAATGAGTTTGAATATGCTCATTTGGATTTTACGTTTTCTCACCGTGAGGAGCTCTTGGCTTATGTGATGTCGAGGATGTCGCTTGTG GATTTGTAA
AA sequence Show only first row Show all	>Lus10032477 pacid=23146247 polypeptide=Lus10032477 locus=Lus10032477.g ID=Lus10032477.BGIv1.0 annot-version=v1.0 MQRFVDTTLAVTKESVKTFTYESLHNIVRLINGFSALLLTILPGKAKILEGIQGWELRPTVRGPRFPRWMKKNGVSSFNKFVHELPTDSDEDGETSDNGP IINEEDEGIYPGSPLYRPRPAKIRTRCKQRSNNGGFRGLITLIFSWVQIPFKFMVKIPLFILGILHKRKMPTWTHKNDYKQQSCSSPCSTPTPKGQASRD QVIHRATDKRRGVIESHRGFYTPFGTPYGTNTPHVTASINEAASQSLAPRWSSRKGYPYPRAMWVSNGVVGSPAFAAYDQGFDVFLGNFRGLVSREHVNK NISSHKYWRYSINEHGTEDIPAMIEKINQIKTRELSNTKLHNNNNNKETNDDSAPQPYKLCAISHSLGGAAMIMYTVTQRLKKNPHRLSRLILLSPAGFH DDSNLVFTTVEYLFLLAAPVLSKLIPAFYIPTRFFRMLLNKLARDFYNYPAVGGLVQTLMSYVVGGDSSNWVGVLGLPHYNMNDMPGISFFVAHHLAQMK HAGKFIMYDYGSESKNTEIYGSAEPLDLGKYYKWIDIPVDLVAGKKDNVIRPSMVVRHYRLMKDAGVRVLYNEFEYAHLDFTFSHREELLAYVMSRMSLV DL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10032477 [exp]	0	1
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016224 [exp]	1.7	0.8343
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10027722 [exp]	1.7	0.8192
					Lus10003636 [exp]	8.1	0.8228
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10005238 [exp]	16.1	0.8078
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10025692 [exp]	19.7	0.7945
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10013753 [exp]	21.6	0.7883
AT3G51810		AT3, GEA1, ATEM...	GUANINE NUCLEOTIDE EXCHANGE FA...		Lus10027816 [exp]	22.6	0.6779
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016225 [exp]	23.1	0.7806
AT5G16100			unknown protein		Lus10004035 [exp]	25.6	0.6259
					Lus10024141 [exp]	26.4	0.7533

Compare expression of checked genes

Lus10032477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.