Plant FIBer expression Database

Lus10032478 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G18480 851 / 0 AtCASP CCAAT-displacement protein alternatively spliced product (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042975
[exp]
986 / 0 AT3G18480 820 / 0.0 CCAAT-displacement protein alternatively spliced product (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G061000
[exp]
875 / 0 AT3G18480 987 / 0.0 CCAAT-displacement protein alternatively spliced product (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08172 CASP_C CASP C terminal
Representative CDS sequence
>Lus10032478 pacid=23146286 polypeptide=Lus10032478 locus=Lus10032478.g ID=Lus10032478.BGIv1.0 annot-version=v1.0
ATGCAGGAACTAGATCAAAAATTGTCTGAACTTGAATCAGAGAACCGGAAAATGAGACTAGAGCTGGAACAATTCAGGACTGAAGCGACACATTTGAAGA
ATCAACAGTCTACAATAAGAAGACTAGAGGAGCGGAACCGTCAATTAGAACTACAGATGGAAGAAAAGGTAAAGGAAATTGTTGAGATGAAGCAGCGTAG
TTTGGCTGAAGAAAATCAAAAAACCTTGGAGGTTTTAAAAGAGAGGGAGCAATCGTTGCAAGATCAACTACGGCAAGCTAAAGAAAGTGTTTCCACTATG
CAGAAGTTGCATGAACTAGCTCAGAGCCAATTATTTGAAGTTCAAGCTCAATCAGATGAAGAAAGGGCTGCAAAGCAATCCGAGGTCACTCTTTTGATGG
ATGAAGTGGAGAGGGCTCAGACACGGCTTCTTAGCCTGGAGAGAGAAAAGGGTGTCCTGTGGTCGCAATTACAATCGGCAAATGAAGAAACGGGAAACAA
GAAAAGTGACAATTTGGATTCTAGCAGTATGTTGGAGAATTCCCTAATTTCCAAAGAGAAAATTATTTCTGAACTAAACATGGAGCTTCACAACATTGAG
ACAACTTTAGCAAATGAGAGGGAACAACACATAAATGAGATAAAACGGTTAAATGCACTGCTCAATGAGAAGGAAGTTTCTATTCAGGACTTGAAGAAAG
AAGTTCAAGCTAGGCCTACATCAAAACTAGTTGATGACTTGCGTAAAAAAGTGAAAATCTTACAGGCAGTAGGCTATAACTCCATAGAGGCAGAAGATTG
GGAAGCTGCAACAGTTGGGGAGGAAATGAGCAAGATGGAGTATCTTCTTCTTGATAAAAATCGGAAAATGGAACATCAACTGACACAATTGAAGGTCCAA
CTTTCTGAGAAAGCATCTTTACTCGACATAGCTGAAAGCAAGATTGCAGAGCTCACTTTGAAGGCTAATGAGCAACTAAAGTTGATTCAGAAGTTGGAAG
ATGATATTTTGAAGGGTTATGGTTCCAAAGATCGAAAAGGGAATTTTTTTGATGATTGGAACCTCTCAGAGGCTAGTGGAACAGAGTTGTCTGAGCATAC
GGACCAGAAACATGTCTCCTCAGATCAAGACCAGAGTTCAATGCTGAAGGTGATATGCAATCAGCGAGATAGATTTAGAACACGTCTACATGATGCAGAA
GAGGAGATAAGGCGACTGAAGGAGAAGATAGGAGTGCTGAGTGAAGAGTTGGAAAAATCTAAAGCAGATAATGTTAAATTGTATGGAAAGATGCGTTATG
TCCAAGATTATAATCTTGAGAAAGTAGTTTCTCGAGGATCAAAGAAGCATGCGGAGGATCTGGAAAGTGGTTTTAGCTCTGATGTGGAATCAAAGTACAA
GAAGATATATGAAGATGACATGAATCCATTCGCAGCATTTTCAAAGAAGGAAAGGGATCAACGGTACAAAGAGTTGGGTTTCAGGGATAGAATTACACTT
AGCAGCGGACGTTTCCTTATGGGCAACAAGTATGCTCGTACTTTTGCGTTCTTCTACACGATCGGCTTGCACGTTTTGGTGTTCAGCTGTCTTTACCGAA
TGTCAGCTCTTAGCTACCTGGGCAATGGCGAGGAATCACTTGTTGTCGATCAAACAACGGACCTCCCACTTCCACATGCACTTTGA
AA sequence
>Lus10032478 pacid=23146286 polypeptide=Lus10032478 locus=Lus10032478.g ID=Lus10032478.BGIv1.0 annot-version=v1.0
MQELDQKLSELESENRKMRLELEQFRTEATHLKNQQSTIRRLEERNRQLELQMEEKVKEIVEMKQRSLAEENQKTLEVLKEREQSLQDQLRQAKESVSTM
QKLHELAQSQLFEVQAQSDEERAAKQSEVTLLMDEVERAQTRLLSLEREKGVLWSQLQSANEETGNKKSDNLDSSSMLENSLISKEKIISELNMELHNIE
TTLANEREQHINEIKRLNALLNEKEVSIQDLKKEVQARPTSKLVDDLRKKVKILQAVGYNSIEAEDWEAATVGEEMSKMEYLLLDKNRKMEHQLTQLKVQ
LSEKASLLDIAESKIAELTLKANEQLKLIQKLEDDILKGYGSKDRKGNFFDDWNLSEASGTELSEHTDQKHVSSDQDQSSMLKVICNQRDRFRTRLHDAE
EEIRRLKEKIGVLSEELEKSKADNVKLYGKMRYVQDYNLEKVVSRGSKKHAEDLESGFSSDVESKYKKIYEDDMNPFAAFSKKERDQRYKELGFRDRITL
SSGRFLMGNKYARTFAFFYTIGLHVLVFSCLYRMSALSYLGNGEESLVVDQTTDLPLPHAL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G18480 AtCASP CCAAT-displacement protein alt... Lus10032478
[exp]
0 1
AT3G18480 AtCASP CCAAT-displacement protein alt... Lus10042975
[exp]
1.0 0.9364
AT1G55320 AAE18 acyl-activating enzyme 18 (.1.... Lus10034997
[exp]
5.8 0.8252
AT1G79830 GC5 golgin candidate 5 (.1.2.3.4) Lus10011437
[exp]
8.5 0.8070
AT3G55020 Ypt/Rab-GAP domain of gyp1p su... Lus10036500
[exp]
22.2 0.7653
AT2G30710 Ypt/Rab-GAP domain of gyp1p su... Lus10008148
[exp]
23.7 0.7155
AT4G38240 GNTI, CGL1 N-ACETYLGLUCOSAMINYLTRANSFERAS... Lus10001389
[exp]
25.0 0.8246
AT5G01010 unknown protein Lus10029706
[exp]
25.5 0.7832
AT5G51180 alpha/beta-Hydrolases superfam... Lus10032496
[exp]
25.8 0.6874
AT1G51590 MNS1, MANIB ALPHA-MANNOSIDASE IB, alpha-ma... Lus10034820
[exp]
28.6 0.7693
AT3G02460 Ypt/Rab-GAP domain of gyp1p su... Lus10034099
[exp]
31.3 0.7486

Lus10032478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.