Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18440 327 / 3e-113 Peptidyl-tRNA hydrolase family protein (.1) AT5G16140 210 / 4e-68 Peptidyl-tRNA hydrolase family protein (.1.2) AT5G19830 207 / 4e-67 Peptidyl-tRNA hydrolase family protein (.1) AT5G38290 207 / 1e-66 Peptidyl-tRNA hydrolase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042977 [exp] 381 / 2e-135 AT1G18440 345 / 6e-121 Peptidyl-tRNA hydrolase family protein (.1) Lus10031901 [exp] 207 / 7e-67 AT5G16140 333 / 1e-116 Peptidyl-tRNA hydrolase family protein (.1.2) Lus10014589 [exp] 204 / 2e-65 AT5G19830 316 / 2e-110 Peptidyl-tRNA hydrolase family protein (.1) Lus10032093 [exp] 169 / 3e-49 AT3G27460 282 / 8e-93 SaGa associated Factor 29 a, SGF29 tudor-like domain (.1.2) Lus10031327 [exp] 150 / 2e-45 AT5G38290 240 / 2e-81 Peptidyl-tRNA hydrolase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G061100 [exp] 324 / 2e-112 AT1G18440 343 / 2e-119 Peptidyl-tRNA hydrolase family protein (.1) Potri.004G098100 [exp] 225 / 9e-74 AT5G38290 348 / 3e-122 Peptidyl-tRNA hydrolase family protein (.1.2) Potri.001G005000 [exp] 209 / 6e-68 AT5G19830 327 / 4e-115 Peptidyl-tRNA hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01195 [flax] [poplar] Pept_tRNA_hydro Peptidyl-tRNA hydrolase
Representative CDS sequence Show only first row Show all	>Lus10032480 pacid=23146434 polypeptide=Lus10032480 locus=Lus10032480.g ID=Lus10032480.BGIv1.0 annot-version=v1.0 ATGCTTCAATCCCCCAATCGTTGCTCTTCTTCTCCTTATTCTTCAACGGCGTCCGACGCCGCCGTGCCATCCAACGAGCCACCGCTGGTTATTAAGCCTA AGCAATACCCTTGGCTCATTGTCGGCCTCGGTAATCCTGGAAAGAAGTATCAGGGTACTCGCCATAATGTTGGTTTCGATATGGTTGATGCAATAGCTGA AGCTGAGGGGATACCAATGACTACCGTCTCTAACAAAGCCCTTTTTGGAAAAGGTTTTATTGGCAATATCCCAGTTATGCTTGCCAAACCACAAACTTTC ATGAATGCAAGTGGTGAGTCTGTTGCGCCAATTGTGTCATATTACAAGGTTCCATTAAAGCAAGTGCTCTTGGTGTATGATGACTTGGATTTACCTTTTG CCAAGTTGAGATTGTTACCAAAAGGTGGCCATGGAGGACACAATGGGATGAGGAGTGTCATCGATCGGTTCAAGGGTAGTCGTGATTTCCCTCGTTTGAG AATTGGTAGTTCTTGTTTCCTCGAGTTTATACGTGAACATTGCATACCATCGCTCTGTGCGGATTATAAGTATGCTGTTTATCCAACTATTCTAGGCATA GGGCGGCCTCCTGGGAAGATGGATGCTGTTAACTTTGTTATGCGCCCATTCAACAGACAAGAACGTGCAGAGTTGGATGATACATTTCACCAAGGAATTG AAGCTGTTAAGATTCTGGTACTGGAAGGGTTCAACAAGAGTGCAACGTTTGTGAACAGTGCCAAATCAATGGAGCAACATGGTTAA
AA sequence Show only first row Show all	>Lus10032480 pacid=23146434 polypeptide=Lus10032480 locus=Lus10032480.g ID=Lus10032480.BGIv1.0 annot-version=v1.0 MLQSPNRCSSSPYSSTASDAAVPSNEPPLVIKPKQYPWLIVGLGNPGKKYQGTRHNVGFDMVDAIAEAEGIPMTTVSNKALFGKGFIGNIPVMLAKPQTF MNASGESVAPIVSYYKVPLKQVLLVYDDLDLPFAKLRLLPKGGHGGHNGMRSVIDRFKGSRDFPRLRIGSSCFLEFIREHCIPSLCADYKYAVYPTILGI GRPPGKMDAVNFVMRPFNRQERAELDDTFHQGIEAVKILVLEGFNKSATFVNSAKSMEQHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18440			Peptidyl-tRNA hydrolase family...		Lus10032480 [exp]	0	1
AT1G26660			Prefoldin chaperone subunit fa...		Lus10030428 [exp]	1.7	0.8376
					Lus10043270 [exp]	3.5	0.8458
AT2G02500		MCT, ATMEPCT, I...	2-C-METHYL-D-ERYTHRITOL 4-PHOS...		Lus10026271 [exp]	6.6	0.7890
AT2G45860			unknown protein		Lus10037857 [exp]	8.9	0.8127
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Lus10033342 [exp]	11.8	0.8277
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10032272 [exp]	14.9	0.7753
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Lus10040538 [exp]	18.5	0.8395
AT1G73430			sec34-like family protein (.1....		Lus10001793 [exp]	21.3	0.8192
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Lus10009537 [exp]	22.0	0.8038
AT1G13570			F-box/RNI-like superfamily pro...		Lus10028368 [exp]	24.5	0.7360

Compare expression of checked genes

Lus10032480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.