Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18490 265 / 2e-84 Eukaryotic aspartyl protease family protein (.1) AT1G25510 252 / 2e-79 Eukaryotic aspartyl protease family protein (.1) AT1G01300 172 / 6e-49 Eukaryotic aspartyl protease family protein (.1) AT3G61820 159 / 3e-44 Eukaryotic aspartyl protease family protein (.1) AT3G20015 147 / 8e-40 Eukaryotic aspartyl protease family protein (.1) AT3G59080 114 / 6e-28 Eukaryotic aspartyl protease family protein (.1.2) AT2G42980 112 / 4e-27 Eukaryotic aspartyl protease family protein (.1) AT5G33340 108 / 6e-26 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 107 / 1e-25 Eukaryotic aspartyl protease family protein (.1) AT5G10760 103 / 2e-24 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042978 [exp] 442 / 1e-153 AT3G18490 504 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10030246 [exp] 167 / 9e-48 AT1G01300 472 / 3e-165 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 164 / 5e-46 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10017362 [exp] 135 / 2e-35 AT3G20015 549 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10010157 [exp] 132 / 3e-34 AT3G20015 545 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 123 / 9e-31 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10025702 [exp] 113 / 4e-27 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 111 / 7e-27 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 109 / 3e-26 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G051800 [exp] 275 / 2e-88 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 259 / 3e-82 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 166 / 7e-47 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G118100 [exp] 162 / 9e-46 AT1G25510 373 / 8e-126 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 158 / 5e-44 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 154 / 4e-42 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 153 / 5e-42 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 115 / 6e-28 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.018G014900 [exp] 107 / 1e-25 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 107 / 1e-25 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10032482 pacid=23146246 polypeptide=Lus10032482 locus=Lus10032482.g ID=Lus10032482.BGIv1.0 annot-version=v1.0 ATGGCTGCCGCCGCACCTCCATTCCTCTTCTTCCCCTTCTTCCTCACTCTCCTCACCCACACCTTCTCCCGCTCTCTCCCTCCTCTCCCTACCCACACTT CCCTCGACGTCTCCGCCTCTCTCACCCGAGCTCTCTACTTCCTCTCTCCACAAACACACCTCAACCACCACCAACAACAACAACAAGAAGCTTCCCTCAT CTATCAATCCACCTTCCACCACCTCAATGCTTCCTCTTCATTCTCCCTCGACCTCCTCTCCCGCGAATCAATCCTCTCCTCCAACCACCACCATGACTAC AAATCCCTAGTCCTCTCCCGCCTCCGCCGCGACTCCGCCCGTGTCCAATCTCTCTCCGCCAAGCTCCTCCTCAAATCGGCATCCTTCGACGATGACCAAT TCCTCCCCCAGTCAACGGATCTGTCCACCCCCATCACTTCCGGCTCCAACCAAGGCAGCGGCGAGTATTTCTCCCGGATCGGAGTCGGCACTCCGCCTCG TCCCTTCTACATGGTCCTCGACACCGGCAGCGACGTCAACTGGCTCCAGTGCGACCCTTGTGCCGACTGCTACACTCAAACCGATCCCATCTTCAACCCT TCTTCTTCCTCTTCTTATTCACCTCTCACCTGCGACTCCGCTCTCTGCTCTTCCCTCGAACTCTCCAGCTGCCGAGCCTCTAGCCAATGTCTCTACCAGG TCAATTACGGCGACGGATCCTTCACCACTGGAGATTTCGTCACCGAAACTGTTTCCTTCGGCTCCTCTTCTGGATCCGTTTCCAAAATTGCTCTCGGATG CGGCCACGACAACGAAGGCCTCTTCGTCGGCGCGGCGGGGCTTTTGGGCCTGGGAGGAGGCCCCCTGTCCTTAACCTCGCAGCTCAAAGCGACGTCCTTC TCTTACTGCCTCGTCAATCGTGATTCCCTTGCTTCGTCGTCACTCGATTTCAACTCTGCTTTCCCCGGCGACGCCGTAACGGCTAGTTTAATCAAGAGCA GGAAGATCGATACCTTTTACTACGTCGGATTGAGCGGGATCAGCGTTGGAGGCCGGCTTCTGTCGATCCCGGCGGGGGCCCTCGCGATCCGCGCTGTTCG ACACGTGCTATGA
AA sequence Show only first row Show all	>Lus10032482 pacid=23146246 polypeptide=Lus10032482 locus=Lus10032482.g ID=Lus10032482.BGIv1.0 annot-version=v1.0 MAAAAPPFLFFPFFLTLLTHTFSRSLPPLPTHTSLDVSASLTRALYFLSPQTHLNHHQQQQQEASLIYQSTFHHLNASSSFSLDLLSRESILSSNHHHDY KSLVLSRLRRDSARVQSLSAKLLLKSASFDDDQFLPQSTDLSTPITSGSNQGSGEYFSRIGVGTPPRPFYMVLDTGSDVNWLQCDPCADCYTQTDPIFNP SSSSSYSPLTCDSALCSSLELSSCRASSQCLYQVNYGDGSFTTGDFVTETVSFGSSSGSVSKIALGCGHDNEGLFVGAAGLLGLGGGPLSLTSQLKATSF SYCLVNRDSLASSSLDFNSAFPGDAVTASLIKSRKIDTFYYVGLSGISVGGRLLSIPAGALAIRAVRHVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032482 [exp]	0	1
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032481 [exp]	1.0	0.9483
AT3G18490			Eukaryotic aspartyl protease f...		Lus10042978 [exp]	1.7	0.9382
AT4G16490			ARM repeat superfamily protein...		Lus10017563 [exp]	2.4	0.9402
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10032075 [exp]	3.5	0.8955
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10039477 [exp]	3.6	0.8947
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Lus10030373 [exp]	3.7	0.9109
AT5G49525			unknown protein		Lus10011181 [exp]	5.3	0.8693
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10025470 [exp]	7.1	0.9166
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10009133 [exp]	7.2	0.8699
AT4G25130		PMSR4	peptide met sulfoxide reductas...		Lus10032504 [exp]	7.7	0.9160

Compare expression of checked genes

Lus10032482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.