Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18450 662 / 0 ATARP4 actin-related protein 4 (.1) AT3G53750 249 / 3e-76 ACT3 actin 3 (.1) AT2G37620 249 / 3e-76 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT5G09810 248 / 9e-76 ACT2/7, ACT7 actin 7 (.1) AT3G12110 247 / 1e-75 ACT11 actin-11 (.1) AT1G49240 243 / 4e-74 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT3G18780 243 / 5e-74 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2) AT3G46520 242 / 9e-74 ACT12 actin-12 (.1) AT5G59370 242 / 1e-73 ACT4 actin 4 (.1.2) AT2G42100 234 / 1e-70 Actin-like ATPase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042980 [exp] 680 / 0 AT1G18450 578 / 0.0 actin-related protein 4 (.1) Lus10005819 [exp] 248 / 1e-75 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 248 / 1e-75 AT5G09810 778 / 0.0 actin 7 (.1) Lus10006783 [exp] 248 / 1e-75 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005163 [exp] 245 / 1e-74 AT3G12110 766 / 0.0 actin-11 (.1) Lus10016558 [exp] 245 / 1e-74 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 245 / 1e-74 AT3G12110 768 / 0.0 actin-11 (.1) Lus10001694 [exp] 245 / 1e-74 AT3G12110 766 / 0.0 actin-11 (.1) Lus10005457 [exp] 245 / 1e-74 AT3G12110 768 / 0.0 actin-11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G061300 [exp] 752 / 0 AT1G18450 705 / 0.0 actin-related protein 4 (.1) Potri.015G053100 [exp] 702 / 0 AT1G18450 682 / 0.0 actin-related protein 4 (.1) Potri.011G148000 [exp] 248 / 3e-76 AT5G09810 731 / 0.0 actin 7 (.1) Potri.001G453600 [exp] 247 / 2e-75 AT5G09810 769 / 0.0 actin 7 (.1) Potri.019G010400 [exp] 244 / 2e-74 AT5G09810 774 / 0.0 actin 7 (.1) Potri.001G309500 [exp] 244 / 2e-74 AT5G09810 775 / 0.0 actin 7 (.1) Potri.016G045500 [exp] 243 / 3e-74 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 243 / 3e-74 AT3G12110 767 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 242 / 9e-74 AT3G12110 765 / 0.0 actin-11 (.1) Potri.010G204300 [exp] 242 / 9e-74 AT3G12110 733 / 0.0 actin-11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00022 [flax] [poplar] Actin Actin
Representative CDS sequence Show only first row Show all	>Lus10032484 pacid=23146361 polypeptide=Lus10032484 locus=Lus10032484.g ID=Lus10032484.BGIv1.0 annot-version=v1.0 ATGTACGGAGGAGATGAAGTATCAGCCATTGTCATAGACTTGGGCTCACACACTTGCAAAGCTGGTTATGCTGGCGAGGATGCTCCCAAGGCCGTTTTCC CTTCTGTTGTTGGAGCTATTGATGAAATGGAAATTGATGACAACACAAATGGTGAGAAGAATTCTGCCGTGGATTCTAAAACTGTTATCAAAGATTCTGA GAGGAAGGGTAATCGCAAGCTATATGTAGGCTCTCAATCCTTAGGGTTTCGCAGGGACAATATGGAAGTGTTGTCACCCATAAAGGATGGAGTGGTCGTT GACTGGGATATTGTGGATACCATATGGGACCATGCGTTTAGGGAATGTTTGCTGGTTGATCCGAAAGAGCACCCTATGCTACTTGCAGAACCTTCATCAA ACAGTCAACAACAGAGAGAAAGGACTGTGGAGCTTATGTTCGAAAAGTATAACGTACCTGCGCTATTTTTGGCCAAGAATGCTGTATTGACTTCTTTTGC CTCAGGCCGTGCTACTGCCTTGGTTGTTGATAGCGGCGGAGGATCAACTACAGTTGCTCCCGTCCATGACGGCTATGTCCTTCAAAAGGCAGTTACTTCA TGTCCTATTGGTGGGGAATTTCTGTCTGATTGCTTGTTGAAAAGCTTAGAGAGCAAGGGTGTTGTGATCAAACCTAGGTACTCTTTCAAGAGAAAGGAAA CACGACCTGGTGACTTTCAGGCAGTAGATGTCGATTTTCCAAATACAACAGAAAGCTACAGACTGTATTCCCAGAGAGTAATTGCTAGTGACATCAAGGA ATGCGTTTGTAGAGCTCCAGATGTACCCTATGACGAGGCATCATATTCAAACATTCCAATGACTCCATATGAGCTTCCTGATGGCCAGACTATTGAGATT GGAGCTGATAGATTCAAGATTCCAGATATTTTATTTAATCCATCTTTGGCACAGACAATTCCTGGTATTGAAAGTTTTGCGGAGATAGCTCCAAATGTCC GTGGTTTACCGCAAATGGTAATAGACAGCATTAACAGGTGCGATGTGGATATTCGGAGAGAGTTGTTCAGTAGTATACTGCTTTCTGGAGGGACAGCATC AATGCAACAGCTAAAGGAGCGTCTTGAGAAAGACTTGATTGAGGAGTCTCCTCAAGCTGCTAGAGTCAAAGTGCTGGCTAGTGGAAATTCAACGGAAAGG AGATTCAGTGTGTGGATTGGAGGAAGCATATTGGCATCTCTTGGCTCATTCCAGCAGATGTGGTTCTCCAAGGCAGAGGTCACGGTGTTCCTGATTAAAT GTTCTTCAATTTTCACGCACGATTTTGCCTTCCCGCCGGTGCCTGGATCCACCCCTGTCGGCCGGAGCCCCGCCTGGAGGAAGAGCAAGAACAAATATTT GAAGGATATGGATAAGTCTTGGGTAGGGTTCCCGTGTACCAACCCGAAATACATGGTTGGCGTAAACAAGTTGTTGGATTTCGCCTTTGCACACAATCGT GGTGAAACAGTGATCTCATGCCCTTGTACTGAGTGTAAATTTAGTAAGTGGCACAACAGGGCAACTGTTTTCGACCATTTGATGAGGGAACCGTTCCCGT CAAACTACACGTTTTGGTATGCCCACGGGGAGGTGCGGGAGCCTAGTGTTGTTAATGGGGTGAGCAAGAATGATGTTGTGGGCAGGGCATACGGTCCACG TGGTCCAAGTTTCAAGGAAATACGTTCCCCTCGACCACTTGATAAGAGAACTGTGTTCCCGGCGAACAACACGTTTCTGACATGTAAACGGCGGGAGGTG GTACACACACCTATTCAAAGTACTTCGACTCGTGGCGGTGTTACATCTCCGTCACCGGTTAAGGTTCCTGTACAATCTAGTCATGTGAAGGTGATGCTTG ATCTAATATATGCTGCTTTTGGACTGATTAGAAAGGATGATCCAAACAGTGATGATGGTGTTAGTAAGGAGGATGAGGAAAAGAAATCAAGAATTCACAA AAAGTAA
AA sequence Show only first row Show all	>Lus10032484 pacid=23146361 polypeptide=Lus10032484 locus=Lus10032484.g ID=Lus10032484.BGIv1.0 annot-version=v1.0 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDEMEIDDNTNGEKNSAVDSKTVIKDSERKGNRKLYVGSQSLGFRRDNMEVLSPIKDGVVV DWDIVDTIWDHAFRECLLVDPKEHPMLLAEPSSNSQQQRERTVELMFEKYNVPALFLAKNAVLTSFASGRATALVVDSGGGSTTVAPVHDGYVLQKAVTS CPIGGEFLSDCLLKSLESKGVVIKPRYSFKRKETRPGDFQAVDVDFPNTTESYRLYSQRVIASDIKECVCRAPDVPYDEASYSNIPMTPYELPDGQTIEI GADRFKIPDILFNPSLAQTIPGIESFAEIAPNVRGLPQMVIDSINRCDVDIRRELFSSILLSGGTASMQQLKERLEKDLIEESPQAARVKVLASGNSTER RFSVWIGGSILASLGSFQQMWFSKAEVTVFLIKCSSIFTHDFAFPPVPGSTPVGRSPAWRKSKNKYLKDMDKSWVGFPCTNPKYMVGVNKLLDFAFAHNR GETVISCPCTECKFSKWHNRATVFDHLMREPFPSNYTFWYAHGEVREPSVVNGVSKNDVVGRAYGPRGPSFKEIRSPRPLDKRTVFPANNTFLTCKRREV VHTPIQSTSTRGGVTSPSPVKVPVQSSHVKVMLDLIYAAFGLIRKDDPNSDDGVSKEDEEKKSRIHKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18450		ATARP4	actin-related protein 4 (.1)		Lus10032484 [exp]	0	1
AT1G18450		ATARP4	actin-related protein 4 (.1)		Lus10042980 [exp]	1.0	0.9289
AT1G17690		NOF1	nucleolar factor 1, unknown pr...		Lus10014835 [exp]	3.9	0.9011
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10019757 [exp]	7.2	0.9044
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Lus10023257 [exp]	7.4	0.8923
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10016367 [exp]	7.5	0.8971
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10038290 [exp]	8.2	0.8845
AT5G16850		ATTERT	telomerase reverse transcripta...		Lus10026080 [exp]	15.4	0.8937
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Lus10014462 [exp]	17.5	0.8850
AT1G77270			unknown protein		Lus10038311 [exp]	22.2	0.8814
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Lus10023718 [exp]	23.7	0.8614

Compare expression of checked genes

Lus10032484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.