Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49050 475 / 5e-163 Eukaryotic aspartyl protease family protein (.1.2) AT4G33490 251 / 5e-78 Eukaryotic aspartyl protease family protein (.1.2) AT1G77480 248 / 1e-76 Eukaryotic aspartyl protease family protein (.1.2) AT1G44130 233 / 2e-71 Eukaryotic aspartyl protease family protein (.1) AT5G43100 119 / 2e-28 Eukaryotic aspartyl protease family protein (.1) AT3G02740 118 / 2e-28 Eukaryotic aspartyl protease family protein (.1) AT2G36670 115 / 2e-27 Eukaryotic aspartyl protease family protein (.1.2) AT3G50050 110 / 1e-25 Eukaryotic aspartyl protease family protein (.1) AT1G65240 109 / 2e-25 Eukaryotic aspartyl protease family protein (.1) AT2G17760 109 / 3e-25 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042982 [exp] 1005 / 0 AT1G49050 569 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10033503 [exp] 258 / 3e-80 AT4G33490 560 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10020874 [exp] 257 / 3e-79 AT4G33490 563 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10018146 [exp] 242 / 3e-74 AT1G77480 460 / 1e-160 Eukaryotic aspartyl protease family protein (.1.2) Lus10025687 [exp] 236 / 4e-72 AT1G77480 463 / 5e-162 Eukaryotic aspartyl protease family protein (.1.2) Lus10014391 [exp] 119 / 2e-28 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 115 / 7e-27 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10027732 [exp] 113 / 1e-26 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10018148 [exp] 106 / 3e-25 AT1G44130 227 / 2e-71 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G053300 [exp] 596 / 0 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.005G179900 [exp] 243 / 7e-75 AT1G44130 501 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Potri.002G081400 [exp] 241 / 6e-74 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1) Potri.005G069600 [exp] 224 / 8e-68 AT4G33490 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099200 [exp] 223 / 5e-67 AT4G33490 521 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099301 [exp] 216 / 2e-64 AT4G33490 503 / 6e-178 Eukaryotic aspartyl protease family protein (.1.2) Potri.014G020200 [exp] 115 / 3e-27 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 112 / 2e-26 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.001G213600 [exp] 108 / 4e-25 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G054900 [exp] 105 / 5e-24 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10032485 pacid=23146212 polypeptide=Lus10032485 locus=Lus10032485.g ID=Lus10032485.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAGACTCAGCCACCGCCGCGATTTACGGGAGTAGTCATCATCCAACTTCCGCCGCCGGACAACCCTTCCGCCGGAAAAACAATTACAGCTT TCACCGTCACTGAAGACGATTATCACGGCGGCTACCCTCAATTACAACAACAAGACAACCATCCAAGCAGCACAACTCTCCAAGAAGAAGAAGAAGAAGA AGTAGGAGGAGGAGGAAGCCGTCTTCCGGTCCAACGTCCGATTCCGACCCGGTTACCGTACCCGAGAATCTTTCTCGGCATTTCGCTGTGCGCCGTGCTA ATCTACGCCTCTCTGTTCTCGGATACCCTCCAGGAGGAGCTGAAGCGCTCCTCCAATGATGATGATCAAGGGCGGAGATCCTTCTTGCTTCCCTTGTATA ACAAACTTGCTTCTCCTCCTGTTTTCGAAAAGGGAATTGAGCATACAGTAGGACGATTGGTGTATAAGGAGAATTCAGTGGCGTTGATTGATCGTCCGAT TATAACACCATTGAAAGTCAACAAGTTGCCTTCTTCTTCTTCTTCAACTGCGGCTAAAGTGGGGGTGGACACATCCCCGATTTTCCCTGTTAAAGGCAAC ATTTTCCCAGATGGCCCTCCAAGGCCTTACTTCCTAGATATTGACACAGGAAGTGATTTGTCATGGATTCAGTGTGATGCTCCCTGTACTAGCTGTGCGA AGGGAGCAAATGATTTGTACAAGCCAAAAACAAGTAACATTGTGCTTCCAGAGGATTCGTATTGCCTGGAAGTTCAGAGGAATACGAAGGCTGAGAAGTG CAACGCGTGCAAACAATGTGACTATGAGATCGAATATGCAGATCATAGCTCCTCTTTGGGCGTTCTTGCAAATGACGAGCTTCATCTAAGCAGTGAGAAC GAGTCATCCAAGTCGAAGTTTACTTTTGGCTGTGCATATGATCAGCAAGGCTTCCTTTTGAACACTCTAGCAAGCACGGATGGAATCCTTGGATTGAGCA GAGCTAAAGTTAGTTTCCCATCTCAGCTGGCAAGCCAAGGAATCATCACTAATGTGGTAGGCCATTGCCTTACCACTGATGTGAGCGGTGGTGGGTATAT GTTTCTTGGTGATGAGTTCCTGCCTCAACGGGGCGTTCGATGGGTCCCTATGCTCGACATCCCTTTCACGGACTTCTATCAGACTGAGATTATGAAACTG ACTTATGGAAGCAGCATCCTGAGTTTAGGGGGGAAAGGTGATAGACCGAGACGAGTAGTGTTTGATAGTGGCAGTTCTTTTACTTATCTCACAAAAGATG CTTACTCTGAACTAGTAGCTTCTCTTAAGGAAGTCGCTAGGGCTGGTCTAATCCAAGATCCTTCCGACCTAGCAATGCCTCTCTGTTGGCGTGCAAAATC CCCGATTAGATCAGTCGCAGATGTGAAGCAGTATTTCAAGACTTTAACCCTTCAATTCGGAAGCAAGTGGTGGATTATCTCTAGGACGTTTCGAGTTCCT GCAGAGGGGTACCTGATCATCAGCGAGAAAGGCAATGTGTGCTTGGGGATTCTTGTCTATTTTGTAACTCTACTTGCTCTGTAG
AA sequence Show only first row Show all	>Lus10032485 pacid=23146212 polypeptide=Lus10032485 locus=Lus10032485.g ID=Lus10032485.BGIv1.0 annot-version=v1.0 MAEETQPPPRFTGVVIIQLPPPDNPSAGKTITAFTVTEDDYHGGYPQLQQQDNHPSSTTLQEEEEEEVGGGGSRLPVQRPIPTRLPYPRIFLGISLCAVL IYASLFSDTLQEELKRSSNDDDQGRRSFLLPLYNKLASPPVFEKGIEHTVGRLVYKENSVALIDRPIITPLKVNKLPSSSSSTAAKVGVDTSPIFPVKGN IFPDGPPRPYFLDIDTGSDLSWIQCDAPCTSCAKGANDLYKPKTSNIVLPEDSYCLEVQRNTKAEKCNACKQCDYEIEYADHSSSLGVLANDELHLSSEN ESSKSKFTFGCAYDQQGFLLNTLASTDGILGLSRAKVSFPSQLASQGIITNVVGHCLTTDVSGGGYMFLGDEFLPQRGVRWVPMLDIPFTDFYQTEIMKL TYGSSILSLGGKGDRPRRVVFDSGSSFTYLTKDAYSELVASLKEVARAGLIQDPSDLAMPLCWRAKSPIRSVADVKQYFKTLTLQFGSKWWIISRTFRVP AEGYLIISEKGNVCLGILVYFVTLLAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49050			Eukaryotic aspartyl protease f...		Lus10032485 [exp]	0	1
AT1G49050			Eukaryotic aspartyl protease f...		Lus10042982 [exp]	1.0	0.9362
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10003308 [exp]	6.5	0.8379
AT2G30440		Plsp2B, TPP	plastidic type I signal peptid...		Lus10011671 [exp]	7.1	0.8474
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10004968 [exp]	16.3	0.8082
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10006864 [exp]	16.6	0.8638
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10037601 [exp]	19.1	0.8546
					Lus10027012 [exp]	19.4	0.7657
AT1G06870		Plsp2A	plastidic type I signal peptid...		Lus10032753 [exp]	21.2	0.8158
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10014925 [exp]	21.2	0.8339
AT1G70250			receptor serine/threonine kina...		Lus10025553 [exp]	23.5	0.8072

Compare expression of checked genes

Lus10032485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.