Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G053600 [exp] 42 / 8e-06 AT1G68585 56 / 3e-11 unknown protein Potri.008G119300 [exp] 41 / 2e-05 AT1G68585 97 / 3e-27 unknown protein Potri.010G126800 [exp] 41 / 4e-05 AT1G68585 92 / 3e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032489 pacid=23146378 polypeptide=Lus10032489 locus=Lus10032489.g ID=Lus10032489.BGIv1.0 annot-version=v1.0 ATGGCTACATCTTCCCCGTCGGCTCCGCTGTCCTACTCCAAAAAGGCTGCAATTTCCCACTCCCCCGCCATTATATATATGATGGCCGGCCCCTTAGCTC CCTACATCCATCAACTTTATTATAGAAAGATGGGATCTTGGGCAAAGAAGGAGCTCTCCAAGCTTCTGGGATCCCGCAGATTAATGCCTCCAGCTCGTCC CCCTTTACTTCTCACCCAACCACCTCCTCATCCCCAGTTGTCACAGGATGGAGTTGTCAAGGTTGTGGTGGCGGCTGACTTGAGATGCGCCAACTGTACA GACAGATTGGCCGATGCCATTTCAAGCTTGGAGTTGGATGCAGCAGTGGAGTCAGTCGAGGTGGATTTCGCGACAAAGGAAGTTACCCTATCACTTCGCG GCCGATGA
AA sequence Show only first row Show all	>Lus10032489 pacid=23146378 polypeptide=Lus10032489 locus=Lus10032489.g ID=Lus10032489.BGIv1.0 annot-version=v1.0 MATSSPSAPLSYSKKAAISHSPAIIYMMAGPLAPYIHQLYYRKMGSWAKKELSKLLGSRRLMPPARPPLLLTQPPPHPQLSQDGVVKVVVAADLRCANCT DRLADAISSLELDAAVESVEVDFATKEVTLSLRGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032489 [exp]	0	1
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10007986 [exp]	2.4	0.6924
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10026355 [exp]	8.2	0.7323
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10008522 [exp]	9.8	0.6680
AT2G17280			Phosphoglycerate mutase family...		Lus10032820 [exp]	10.2	0.6392
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10024179 [exp]	20.1	0.6317
AT3G07700			Protein kinase superfamily pro...		Lus10012317 [exp]	20.1	0.5922
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003897 [exp]	25.0	0.6366
AT1G62810			Copper amine oxidase family pr...		Lus10024568 [exp]	31.6	0.6536
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10017072 [exp]	31.7	0.5743
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042379 [exp]	34.6	0.6494

Compare expression of checked genes

Lus10032489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.