Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73875 446 / 3e-154 DNAse I-like superfamily protein (.1) AT3G18500 335 / 8e-111 DNAse I-like superfamily protein (.1.2.3) AT5G11350 215 / 4e-62 DNAse I-like superfamily protein (.1) AT3G58560 111 / 6e-26 DNAse I-like superfamily protein (.1) AT3G58580 100 / 1e-22 DNAse I-like superfamily protein (.1) AT1G31500 78 / 2e-15 DNAse I-like superfamily protein (.1.2.3.4) AT1G02270 43 / 0.0005 Calcium-binding endonuclease/exonuclease/phosphatase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014775 [exp] 327 / 8e-108 AT3G18500 423 / 7e-146 DNAse I-like superfamily protein (.1.2.3) Lus10036357 [exp] 325 / 3e-107 AT3G18500 422 / 2e-145 DNAse I-like superfamily protein (.1.2.3) Lus10013119 [exp] 216 / 9e-63 AT5G11350 536 / 0.0 DNAse I-like superfamily protein (.1) Lus10008086 [exp] 208 / 9e-60 AT5G11350 526 / 9e-178 DNAse I-like superfamily protein (.1) Lus10042985 [exp] 101 / 4e-25 AT1G73875 74 / 8e-16 DNAse I-like superfamily protein (.1) Lus10029338 [exp] 104 / 1e-23 AT3G58560 945 / 0.0 DNAse I-like superfamily protein (.1) Lus10015981 [exp] 103 / 2e-23 AT3G58580 872 / 0.0 DNAse I-like superfamily protein (.1) Lus10016206 [exp] 103 / 3e-23 AT3G58560 944 / 0.0 DNAse I-like superfamily protein (.1) Lus10012293 [exp] 99 / 6e-22 AT3G58560 949 / 0.0 DNAse I-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G057100 [exp] 510 / 2e-179 AT1G73875 502 / 2e-176 DNAse I-like superfamily protein (.1) Potri.018G032300 [exp] 224 / 3e-65 AT5G11350 560 / 0.0 DNAse I-like superfamily protein (.1) Potri.016G061700 [exp] 106 / 2e-24 AT3G58560 926 / 0.0 DNAse I-like superfamily protein (.1) Potri.006G195600 [exp] 103 / 2e-23 AT3G58560 904 / 0.0 DNAse I-like superfamily protein (.1) Potri.003G106000 [exp] 86 / 5e-18 AT1G31500 457 / 1e-160 DNAse I-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10032490 pacid=23146413 polypeptide=Lus10032490 locus=Lus10032490.g ID=Lus10032490.BGIv1.0 annot-version=v1.0 ATGAGAGAAGGAAGACTTCAAGCTTCGGTGAAGGAGCGATCATTTACCAGGTGCTCTGATAACGCCGAACAGTGTCCTCACAAACACCGTGCAAAGAAGC GAAAATTATTGTCCGCCCCCCAAACCCTAACTCCGAATAGGTACGAACCAATTAATTCGTCGTCTTCGTCTGGAACTTTTCGGAGAAAGCCAAAACGGAT CAGAAATTCGACTACTTCGGAGGACAATCGGCGATGGATATTCAGTTCTCATGATCCCACTGCTTTTAGAGATAAAGTCGTGGTAGTGTCTTATAACATA CTCGGTGTGGCGAATGCCTTGAACCATCCAGACTTGTACTCTGGTGTTCCAAGGGAATTCTTGAAGTGGAATCGCCGGAAACAGCTAATATGTGAGGAGA TCAAACGATATGAAGCTGGAATCTTATGTTTTCAGGCAGGCATTGATTTGAAGAGTGAACTAGAAATTGTATCAGGGAAGGCCACCTGCTCCATGACAAA TTCAATTTATAGCTTCCAGGATGAGGTTGATCGTTTCAGTGATTTAGATAATCTTCTCCAAAAAGATGGCTTTAGAGGAATCCATAAGGCTCGCACTGGT GAAGCATGTGACGGCTGTGCTATTTTCTGGAAAGATAAGATATTTACCCTCCTACATGAAGAAAGCATTGAATTCCGTAAATTTGGCCTCCGTGACAATG TAGCTCAGCTCTGTATCCTAGAGATCAATGACCATCAATCAGAAACCGACACAGAGATCCAAATACCAGAGATAACAGCAAGGAAAAATAGAAGTTTTGT AGTTGCAAATATACATGTCCTTTTCAATCCAAACCGCGGAGACATCAAGTTAGGCCAGGTCCGATTGCTTCTACAGAAGGCTTATAAGTTATCAGACGAA TGGGGCAGCATTCCTGTTATAATTGGTGGGGATCTAAATAGCATCCCAGAGAGTGCCATGTATCAGTTTCTTTCTTCATCTGAGTTGGATATCCTTGGGC ATGACCGTAGGAAGATATCTGGACAGCTTGGACGTCCAGCGCAGCAAAAACCCATTAGGTTCCAGATCGAGGATGCGTCCAGATGGACTGAGGAAGAACT AAAGTTAGCAACTGGCAGAAAAGGAGTTGCTCATCTTCAGCACCAGCTAAAGCTTTCTAGTGCATATGCCAGGCTTCCTGGGAACAGCAGATCAAGTGGC GCTTGTGGAGAACCATTGGCTACCTCCTACCACTCGAAATTTATGGGAACCGTTGATTATATTTGGCATACAAAGGAACTTGTACCTCTAAAAGTTCTTG AAACCTTACCCCTTGATGTTTTGAAGAGAAATGCAGGTCTACCTAGCAAGATGTGTGGAAGCGATCATCTAGCTCTCGTATGTGAGCTGGCATTTGCAGA TGACTGA
AA sequence Show only first row Show all	>Lus10032490 pacid=23146413 polypeptide=Lus10032490 locus=Lus10032490.g ID=Lus10032490.BGIv1.0 annot-version=v1.0 MREGRLQASVKERSFTRCSDNAEQCPHKHRAKKRKLLSAPQTLTPNRYEPINSSSSSGTFRRKPKRIRNSTTSEDNRRWIFSSHDPTAFRDKVVVVSYNI LGVANALNHPDLYSGVPREFLKWNRRKQLICEEIKRYEAGILCFQAGIDLKSELEIVSGKATCSMTNSIYSFQDEVDRFSDLDNLLQKDGFRGIHKARTG EACDGCAIFWKDKIFTLLHEESIEFRKFGLRDNVAQLCILEINDHQSETDTEIQIPEITARKNRSFVVANIHVLFNPNRGDIKLGQVRLLLQKAYKLSDE WGSIPVIIGGDLNSIPESAMYQFLSSSELDILGHDRRKISGQLGRPAQQKPIRFQIEDASRWTEEELKLATGRKGVAHLQHQLKLSSAYARLPGNSRSSG ACGEPLATSYHSKFMGTVDYIWHTKELVPLKVLETLPLDVLKRNAGLPSKMCGSDHLALVCELAFADD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73875			DNAse I-like superfamily prote...		Lus10032490 [exp]	0	1
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10015090 [exp]	1.7	0.8748
AT1G11060			WAPL (Wings apart-like protein...		Lus10005857 [exp]	2.4	0.8550
AT2G16940			Splicing factor, CC1-like (.1....		Lus10005059 [exp]	4.6	0.8379
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Lus10026202 [exp]	6.0	0.8401
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	6.5	0.8381
AT2G06005		FIP1	FRIGIDA interacting protein 1 ...		Lus10021558 [exp]	6.7	0.8188
AT1G23230			unknown protein		Lus10016701 [exp]	9.3	0.8477
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10029715 [exp]	9.4	0.8051
AT1G12930			ARM repeat superfamily protein...		Lus10012590 [exp]	10.0	0.8106
AT5G27620		CYCH;1	cyclin H;1 (.1)		Lus10017091 [exp]	10.4	0.7838

Compare expression of checked genes

Lus10032490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.