Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61530 443 / 1e-155 small G protein family protein / RhoGAP family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042986 [exp] 634 / 0 AT5G61530 512 / 0.0 small G protein family protein / RhoGAP family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G233400 [exp] 529 / 0 AT5G61530 535 / 0.0 small G protein family protein / RhoGAP family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0409 [flax] [poplar] GAP PF00620 [flax] [poplar] RhoGAP RhoGAP domain
Representative CDS sequence Show only first row Show all	>Lus10032491 pacid=23146406 polypeptide=Lus10032491 locus=Lus10032491.g ID=Lus10032491.BGIv1.0 annot-version=v1.0 ATGCCCTCCGCCGTCTCTCCACAGTGGCAAGAGAAAGCTACTGTTTTCTTTTCGACCTCAGGTGTGAAACTTAAAGAGGCTGGGCACTCAGCCGGAACAT TTGTTGGAGAAGTTGCAAATGATGCTAAAGGTAATGTTGCTGATGTTGCGGGACGTGTTGGGTCCGCTGTGAAAAGTCGGTGGGCCATTCTCAAGGAGCC ATCAACTAGGCATATCTTCCAGGAGCGCCTGATAACTGCTGCTGCTACAACGGGTATGTTCTTACGAAAGGGCTTCTCTGAAACAAAGGACAAAGTTTCT GTAGGGAAGACTAAAGTTGAAGAGGTGGCCAAGAAAACTGCCCAGAAAAGTAAGACCATTTTAACGGACATTGAACGACGCCAAAAGGGAGTTGCAAGCA CTGATGTATTTGGGGTTCCCATAGAGATCACTGTACAGAGACAGCAATCTGGTAGGCCTGTGCCCAATGTGTTGGTTAATTGTGCTGATTATCTCATACA ATCGGGGTTAAACTCTGTTGACTTGTTTAAAAATGAAGGGGACAGGTTGATAGTTCAGCAACTGGTGTCAATGTTTAACCAAGATCTGAATGCATTACTG CCTGATGGTATTAATTCCATTGATGTGGCATTTCTGATGAAATGTTATCTAGCAAGTCTTCCTGAACCACTAACCACCTTTGAGCATTACGATGCAATAA AAGGTGCTCGTTCTAACGTAAATGCCATGAGAAATACCCTCAAGAGACTTCCTACTGCGAACTACATGACACTGGAGTTCATCACCGCACTTCTGCTTCG CGTTAGTCAGAAATCGCTTCTTAATAAGGCAAGAATACTCCTTTTTTCCTCTCTAGCTCTCCGTTTCAACCTTGTCTCTAGCTCAATTATTGTTGCTGTT TCAACCTTGTCCCAGATGGATGCTAGGAGTCTTGCTACGGAAATTGCACCTGTCGTGATGTGGCGAAAAGAGCAAAGACCAGAATCATATAGGCAACATT GGAATTCTATGTTGCAAAATTCATCAAAAACAAAAACGGATGTAAAACCACCTACTTACAGCGAATGGGACATTCTTTCAGGTATGTGTCTACTGGCAGT ATACGATGTTACTTTGGAGCACAGAGATGATTACTTTTGA
AA sequence Show only first row Show all	>Lus10032491 pacid=23146406 polypeptide=Lus10032491 locus=Lus10032491.g ID=Lus10032491.BGIv1.0 annot-version=v1.0 MPSAVSPQWQEKATVFFSTSGVKLKEAGHSAGTFVGEVANDAKGNVADVAGRVGSAVKSRWAILKEPSTRHIFQERLITAAATTGMFLRKGFSETKDKVS VGKTKVEEVAKKTAQKSKTILTDIERRQKGVASTDVFGVPIEITVQRQQSGRPVPNVLVNCADYLIQSGLNSVDLFKNEGDRLIVQQLVSMFNQDLNALL PDGINSIDVAFLMKCYLASLPEPLTTFEHYDAIKGARSNVNAMRNTLKRLPTANYMTLEFITALLLRVSQKSLLNKARILLFSSLALRFNLVSSSIIVAV STLSQMDARSLATEIAPVVMWRKEQRPESYRQHWNSMLQNSSKTKTDVKPPTYSEWDILSGMCLLAVYDVTLEHRDDYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61530			small G protein family protein...		Lus10032491 [exp]	0	1
AT1G52320			unknown protein		Lus10025777 [exp]	2.8	0.8768
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10034344 [exp]	2.8	0.8797
AT3G54850		ATPUB14	plant U-box 14 (.1)		Lus10038699 [exp]	4.5	0.8383
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10011437 [exp]	6.7	0.8409
AT5G01010			unknown protein		Lus10029706 [exp]	7.4	0.8572
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10017462 [exp]	14.4	0.8738
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10001367 [exp]	14.7	0.8614
AT2G38610			RNA-binding KH domain-containi...		Lus10034443 [exp]	15.0	0.8518
AT3G59350			Protein kinase superfamily pro...		Lus10026706 [exp]	15.2	0.8491
AT1G16270			Protein kinase superfamily pro...		Lus10031749 [exp]	16.0	0.8306

Compare expression of checked genes

Lus10032491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.