Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07620 431 / 2e-149 Protein kinase superfamily protein (.1) AT5G61570 389 / 7e-133 Protein kinase superfamily protein (.1.2) AT3G24660 209 / 4e-60 TMKL1 transmembrane kinase-like 1 (.1) AT3G51740 196 / 1e-54 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT1G48480 165 / 2e-44 RKL1 receptor-like kinase 1 (.1) AT2G26730 165 / 2e-44 Leucine-rich repeat protein kinase family protein (.1) AT3G56100 165 / 4e-44 IMK3, MRLK meristematic receptor-like kinase (.1) AT4G23740 164 / 6e-44 Leucine-rich repeat protein kinase family protein (.1) AT1G64210 162 / 1e-43 Leucine-rich repeat protein kinase family protein (.1) AT5G05160 162 / 3e-43 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042988 [exp] 644 / 0 AT5G07620 442 / 7e-156 Protein kinase superfamily protein (.1) Lus10022818 [exp] 227 / 1e-66 AT3G24660 883 / 0.0 transmembrane kinase-like 1 (.1) Lus10011886 [exp] 214 / 8e-64 AT3G24660 649 / 0.0 transmembrane kinase-like 1 (.1) Lus10022679 [exp] 207 / 7e-59 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014235 [exp] 205 / 5e-58 AT3G51740 933 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014236 [exp] 205 / 5e-58 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022678 [exp] 197 / 3e-55 AT3G51740 885 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10012225 [exp] 192 / 2e-54 AT3G51740 679 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10019113 [exp] 173 / 4e-47 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G232800 [exp] 454 / 2e-159 AT5G07620 365 / 1e-126 Protein kinase superfamily protein (.1) Potri.002G251700 [exp] 209 / 2e-60 AT3G24660 917 / 0.0 transmembrane kinase-like 1 (.1) Potri.016G126300 [exp] 211 / 3e-60 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.006G104300 [exp] 203 / 2e-57 AT3G51740 996 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.010G183400 [exp] 196 / 1e-54 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.013G158800 [exp] 179 / 3e-49 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 176 / 2e-48 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 170 / 4e-46 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 170 / 6e-46 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 169 / 6e-46 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10032493 pacid=23146435 polypeptide=Lus10032493 locus=Lus10032493.g ID=Lus10032493.BGIv1.0 annot-version=v1.0 ATGAAGGTTGTTGTACAGGAGACACCTACATCGATTTTGGGCTACATTGGACTACACGACCCCCCCTCTCCCTCCTCAACCGTGCTGTGTGGGAAGATGA CGCCCGTGCTAAGCGCGATGTGTGGCGAGAAACTATTTGAGGAGGTCGAGAGTTTAGGAGAAGCACATGTTCGCCCTGCCACACGACTCCTCCAGTCCCA ACTACATCCAGAGGCTGAGGGTCTTCCGGACCCGAAGACATTTGATGTTTCAAAGACAGGCCTCCTAAACAGCAGACTGCAAGGGAACCGTCATGGTGGG AGAAGGTCAAATCTGTTGCATCACGCAGTAAGAAAAATGCACACCACCCGTTCGATGAAATTCCTCATCGGAGTAACCTCGGCTGCCGCCTTGCTCATTA TCTTACTTGCGATCTTCCTCTGCTTGAGAAGGACAAGGGGAAGAAGGAAGAGGCAGCAGTATGATGTGGAAATCACTGAGCTTGATAAGAAGAAACAGCA AGGAGAAGAGACAACAACAACTGTAACAGTGCCGGTTGTGACTGAGGAGGATTTGGTGAGGTTCCATGGCGGCCAGGACCTTACTGTAAGCGACATTCTC GATGCACCTGGAGAAGTCATTGGCAAATCCAACTACGGCACTTTGTACAAGGCCCTGTTGCAGAGGACCAACTGTGTTAGGCTGCTACGGTTCTTGAGGC CCGTTTGTGCTTCAAGAGTCAAAGATTTCAATGCTGCTGTTCAGCTGCTGGGCTGCTTTAGACATCCGAATTTGGTCCCGCTGCTGGGGTTTTATGCTGG TTCTAGAGGTGAAAAGCTCCTTGTTCATCCCTTTTTCAGGCGTGGCGATTTGGCTCATTTCATTAGAGATGGAAATGCTGAGTATCATAAATGGACAACC ATCCACAGGTTATCTATTGGTATAGCCAAGGGACTGGATCACCTTCATACAGGTTTACAGAAGCCTGTGATTCATGGTAATCTAAAGTCGAAGAACATTC TCCTGGATCGCAATTGCGAACCTTGCATATCAGATTTCGGCCTCCATCTCCTATTAAATCCGACCGCTGGACAAGAAATGCTTGAGACTTCTGCAGCAGA AGGATACAAAGCCCCCGAGCTTATCAAAATGAAAGATGCAAGTGAAGAGACTGATATATACGGCCTAGGAATAGTCTTGCTTGAGCTTCTCTCGGGGAAG GAGCCAGTCAATCCGAATCCTACTCCTGATGAGGATTTTTACCTTCCGACCTTCATGAGAAACGCGATCCTTGATCGTAGAATCACGGACATTTATCATC CAGACATTCTTATTGACAGTGAGGGTGATAAGAGGGGAAACTCTGTTACAGAAGAGAGCATATTCAAGTTCTTTCAACTCGCAATGTCTTGCTGTTCGCC TTGCCCTTCTCTTAGACCGAACATCAAGCAAGTATTATCAAAGCTGGAAGAAATGGAAAAATGTGGGTAA
AA sequence Show only first row Show all	>Lus10032493 pacid=23146435 polypeptide=Lus10032493 locus=Lus10032493.g ID=Lus10032493.BGIv1.0 annot-version=v1.0 MKVVVQETPTSILGYIGLHDPPSPSSTVLCGKMTPVLSAMCGEKLFEEVESLGEAHVRPATRLLQSQLHPEAEGLPDPKTFDVSKTGLLNSRLQGNRHGG RRSNLLHHAVRKMHTTRSMKFLIGVTSAAALLIILLAIFLCLRRTRGRRKRQQYDVEITELDKKKQQGEETTTTVTVPVVTEEDLVRFHGGQDLTVSDIL DAPGEVIGKSNYGTLYKALLQRTNCVRLLRFLRPVCASRVKDFNAAVQLLGCFRHPNLVPLLGFYAGSRGEKLLVHPFFRRGDLAHFIRDGNAEYHKWTT IHRLSIGIAKGLDHLHTGLQKPVIHGNLKSKNILLDRNCEPCISDFGLHLLLNPTAGQEMLETSAAEGYKAPELIKMKDASEETDIYGLGIVLLELLSGK EPVNPNPTPDEDFYLPTFMRNAILDRRITDIYHPDILIDSEGDKRGNSVTEESIFKFFQLAMSCCSPCPSLRPNIKQVLSKLEEMEKCG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07620			Protein kinase superfamily pro...		Lus10032493 [exp]	0	1
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10022176 [exp]	2.0	0.8773
AT3G11950		ATHST	TRAF-like superfamily protein ...		Lus10029325 [exp]	3.3	0.8847
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10001013 [exp]	6.9	0.8610
AT2G26680			unknown protein		Lus10043275 [exp]	9.2	0.8655
AT1G16860			Ubiquitin-specific protease fa...		Lus10034825 [exp]	11.7	0.8633
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10039895 [exp]	12.4	0.8553
AT5G11980			conserved oligomeric Golgi com...		Lus10026437 [exp]	13.6	0.8668
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10040465 [exp]	13.9	0.8772
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10030155 [exp]	14.3	0.8454
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10028154 [exp]	15.9	0.8375

Compare expression of checked genes

Lus10032493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.