Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51220 301 / 5e-104 ubiquinol-cytochrome C chaperone family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042991 [exp] 375 / 2e-133 AT5G51220 365 / 8e-128 ubiquinol-cytochrome C chaperone family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151600 [exp] 342 / 3e-120 AT5G51220 384 / 3e-135 ubiquinol-cytochrome C chaperone family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03981 [flax] [poplar] Ubiq_cyt_C_chap Ubiquinol-cytochrome C chaperone
Representative CDS sequence Show only first row Show all	>Lus10032494 pacid=23146234 polypeptide=Lus10032494 locus=Lus10032494.g ID=Lus10032494.BGIv1.0 annot-version=v1.0 ATGTTCTGGTCAAAGCCGTGTTCATTAGCTTTGGCTCCCGGTTCCCCGCTCAGAGTTGAAGAGCCGAGCTATGAGGGTCTTCGCCGTGTCATATTTAAGA TGCTATTGTTTTATAGCAAACAAAGCAAATCTATTCGTGGAGCCAATGTAGCATATCGGAGGATCATTCATCAAGTAGATAAGCCAGCTATATATGAAGT ATTCAACTTGGAGAAGAACTTTAGAATGACGTTTTCCCTACTTGTACTTCACATGTGGCTAATCTTACGCCGACTAAAGCAAGAAGGAAAAGAAGGTTCT GAATTTGGGCAATACATCTACGAGATTTACAACCACGATGTGGAGCTTAGAGTGTCTAAAGCAGGGGTTAATTTATTGTTGACAAAATGGATGAAAGAGC TGGAGAAGATATTCTATGGAAACATTGTTGCTTATGATGCTGCCATACTGCCAGAGGCTAAGCCAGATGAGCTGCCAAGGGTGATATGGAGGAATGTATT TGCAGATGATGGTACATCAGAGCCAGATCAGGCTGCATCACATGCTGTGCAGGCATGTTATCTTAACTACCTTTCTTCGTCTTTGCTGGTTTTAGACTAG
AA sequence Show only first row Show all	>Lus10032494 pacid=23146234 polypeptide=Lus10032494 locus=Lus10032494.g ID=Lus10032494.BGIv1.0 annot-version=v1.0 MFWSKPCSLALAPGSPLRVEEPSYEGLRRVIFKMLLFYSKQSKSIRGANVAYRRIIHQVDKPAIYEVFNLEKNFRMTFSLLVLHMWLILRRLKQEGKEGS EFGQYIYEIYNHDVELRVSKAGVNLLLTKWMKELEKIFYGNIVAYDAAILPEAKPDELPRVIWRNVFADDGTSEPDQAASHAVQACYLNYLSSSLLVLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51220			ubiquinol-cytochrome C chapero...		Lus10032494 [exp]	0	1
AT1G13040			Pentatricopeptide repeat (PPR-...		Lus10036129 [exp]	97.8	0.7240
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10010898 [exp]	105.2	0.6927
AT5G44230			Pentatricopeptide repeat (PPR)...		Lus10014279 [exp]	109.0	0.7158
AT1G51980			Insulinase (Peptidase family M...		Lus10025839 [exp]	120.0	0.6780
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Lus10032186 [exp]	132.7	0.7128
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10042570 [exp]	154.4	0.7131

Compare expression of checked genes

Lus10032494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.