Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07590 799 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042992 [exp] 931 / 0 AT5G07590 824 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004893 [exp] 48 / 1e-05 AT3G44530 1389 / 0.0 homolog of histone chaperone HIRA (.1.2) Lus10020585 [exp] 48 / 1e-05 AT3G44530 1395 / 0.0 homolog of histone chaperone HIRA (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151400 [exp] 838 / 0 AT5G07590 818 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G079100 [exp] 828 / 0 AT5G07590 811 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G184900 [exp] 48 / 2e-05 AT3G44530 1365 / 0.0 homolog of histone chaperone HIRA (.1.2) Potri.009G144800 [exp] 47 / 3e-05 AT3G44530 1398 / 0.0 homolog of histone chaperone HIRA (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10032495 pacid=23146271 polypeptide=Lus10032495 locus=Lus10032495.g ID=Lus10032495.BGIv1.0 annot-version=v1.0 ATGGAATTCACGGAGGCTTACAAGCAGACCGGACCCTGTTGCTTTTCTCCCAATTCGAGATACATCGCCGTCGCTGTTGATTACCGACTGGTGATACGGG ACACCTTCACGTTTAAGGTTGTGCAATTGTTTTCTTGCTTGGATAAGATAAGTTTCATAGAATGGGCGCTAGATTCTGAATACATTCTTTGCGGCTTGTA TAAAAGGCCGATGATACAGGCATGGTCTTTGACCCAACCTGAGTGGACATGTAAGATAGATGAAGGTCCAGCTGGTATTGCTTATGCTAGATGGAGCCCT GACAGCCGTCACATTCTTACAACCTCCGATTTCCAGTTGCGACTAACTGTTTGGTCATTGCTGAACACAGCTTGTGTTCATGTGCAATGGCCGAAACATG GCTCAAAGGGAGTTTGCTTCACCAAAGATGGGCAATTTGCAGCCATTTGTACCAGGCGGGATTGCAAAGATTACGTGAATCTTTTGTCATGCCAAACGTG GGAGATAATGGGTTCTTTTGCTGTTGATACCGTGGATTTGGCTGACATTGGATACTCACCTGATGATAGTGCTATTGTGATATGGGATTCTCCTCTTGAA TATAAGGTTTTGATTTACTCCCCTGACGGGCGGTGTCTGTTCAAGTATCAAGCATATGAGAGTGGACTAGGAGTAAAAAGTGTATCCTGGTCCCCTTGTG GCCAGTTTTTAGCTGTAGGTAGTTATGATCAAATGCTGCGTGTTCTGAATCACCTGACCTGGAAAACTTTTGCCGAGTTTATGCATGTGTCTGCTGTTCG TGCTCCTTGTTGTGCTGCTGTCTTCAAGGAAGTGGATGAGCCTGTGAATCTTGACATGTCTGAATTGAGCTTAAATGATGAGTTCCTCCAAGGAAATTCT GGTAAGCACAACTCTTTCTTGTTCTACTGCTTATCTGATGCCTCTAGACTGAAGTTTATTGTTTCAACTCCAAAAGATGTTGCAGAGGAACCTTACAGAG TTCGATACGAGGTTATGGAAGTACCTATTTCTCTGCCTTTCCAAAAGCCTCAAGCAGACAAGCCAAATCCCAAGCAAGGAATTGGTATAATGTCATGGAG CAGTGACAGCCAATACATCTGTACTCGCAACGACAGCATGCCTAGTGCACTGTGGATATGGGACATCCATCGTCTAGAGCTGGCAGCCATCTTGGTGCAG AAGGATCCCATAAAAGCGGCAGCTTGGGACCCGACATGCACCCGTCTGGTGATCTGTACGGGGAGCTCTCACATGTACATGTGGTCTCCGGCTGGTGCAT ACTGCGTAAGTAATCCTCTGCCGCAGTTCTCCATAATGGATCTGAAATGGAACGCCGATGGAAGTTGTCTTCTCCTCAAAGACAAAGAGTCGTTCTGCTG CGCCGCAATGCCTTTGTTGCCGGAATCCAGCGATTATAGCTCAGATGAGTGCTGA
AA sequence Show only first row Show all	>Lus10032495 pacid=23146271 polypeptide=Lus10032495 locus=Lus10032495.g ID=Lus10032495.BGIv1.0 annot-version=v1.0 MEFTEAYKQTGPCCFSPNSRYIAVAVDYRLVIRDTFTFKVVQLFSCLDKISFIEWALDSEYILCGLYKRPMIQAWSLTQPEWTCKIDEGPAGIAYARWSP DSRHILTTSDFQLRLTVWSLLNTACVHVQWPKHGSKGVCFTKDGQFAAICTRRDCKDYVNLLSCQTWEIMGSFAVDTVDLADIGYSPDDSAIVIWDSPLE YKVLIYSPDGRCLFKYQAYESGLGVKSVSWSPCGQFLAVGSYDQMLRVLNHLTWKTFAEFMHVSAVRAPCCAAVFKEVDEPVNLDMSELSLNDEFLQGNS GKHNSFLFYCLSDASRLKFIVSTPKDVAEEPYRVRYEVMEVPISLPFQKPQADKPNPKQGIGIMSWSSDSQYICTRNDSMPSALWIWDIHRLELAAILVQ KDPIKAAAWDPTCTRLVICTGSSHMYMWSPAGAYCVSNPLPQFSIMDLKWNADGSCLLLKDKESFCCAAMPLLPESSDYSSDEC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07590			Transducin/WD40 repeat-like su...		Lus10032495 [exp]	0	1
AT4G10630			Glutaredoxin family protein (....		Lus10008270 [exp]	3.2	0.9273
AT4G10630			Glutaredoxin family protein (....		Lus10033238 [exp]	4.2	0.9176
AT5G58930			Protein of unknown function (D...		Lus10018206 [exp]	8.5	0.9099
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10002326 [exp]	8.8	0.8967
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Lus10020084 [exp]	9.2	0.8985
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10009323 [exp]	9.2	0.8918
AT1G70280			NHL domain-containing protein ...		Lus10029176 [exp]	10.4	0.8956
AT1G13030			sphere organelles protein-rela...		Lus10036876 [exp]	11.0	0.8962
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10009123 [exp]	13.2	0.8679
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10042602 [exp]	13.4	0.8977

Compare expression of checked genes

Lus10032495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.