Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51180 525 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G25770 362 / 1e-123 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G10040 334 / 8e-113 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G29120 278 / 2e-90 Hydrolase-like protein family (.1.2.3.4.5) AT1G58350 48 / 1e-05 ZW18 Putative serine esterase family protein (.1.2.3) AT1G09980 47 / 2e-05 Putative serine esterase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042993 [exp] 709 / 0 AT5G51180 501 / 1e-178 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10006982 [exp] 329 / 2e-110 AT4G25770 432 / 4e-150 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001320 [exp] 311 / 2e-104 AT4G25770 436 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001893 [exp] 262 / 4e-84 AT1G29120 558 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Lus10013909 [exp] 258 / 2e-82 AT1G29120 561 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Lus10038351 [exp] 47 / 2e-05 AT1G09980 1025 / 0.0 Putative serine esterase family protein (.1.2) Lus10036214 [exp] 45 / 5e-05 AT1G58350 640 / 0.0 Putative serine esterase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151300 [exp] 589 / 0 AT5G51180 541 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G079400 [exp] 581 / 0 AT5G51180 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.018G096035 [exp] 353 / 5e-120 AT4G25770 502 / 1e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G113000 [exp] 315 / 7e-105 AT1G10040 471 / 2e-165 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.011G065700 [exp] 264 / 8e-85 AT1G29120 580 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Potri.019G077700 [exp] 45 / 5e-05 AT1G58350 1036 / 0.0 Putative serine esterase family protein (.1.2.3) Potri.013G104400 [exp] 45 / 7e-05 AT1G58350 1027 / 0.0 Putative serine esterase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05057 [flax] [poplar] DUF676 Putative serine esterase (DUF676)
Representative CDS sequence Show only first row Show all	>Lus10032496 pacid=23146291 polypeptide=Lus10032496 locus=Lus10032496.g ID=Lus10032496.BGIv1.0 annot-version=v1.0 ATGGAGAACGGCAATGGAACCGTGGAAAACGCAGTCTGCTCGTCGGAGTCGGTCAACGGGAGCCGTGATGTCTGGAGCTGTAACGACTCTGACTCTTCTA CAGCTGATCATCTGGTTATCATGGTCCACGGTATCCTTGGCAGCTCAAGTGATTGGAAGTATGGAGCTGAGCAGTTCGTTAGAAATCTCCTGGATAAAGT GTTTGTCCATTGTAGTGAACGGAACATGTCTAGGCTGACTCTCGATGGAGTAGATGTGATGGGCGAACGATTGGCTCAAGAGGTCCTTGAAGTCATTGCA AAAAAGCCCAATTTACGTAAGATATCGTTTGTTGCACATTCAGTGGGAGGACTGGTGGCAAGGTATTGTATTGGGAAATTGTATAGGCCCCCTAGAAAAG AAAATGCAGAGGGTCCAAACGAAGAAGAGTTGGATTCGACAATAGGTGGCCTGGAGGCTGTCAATTTTATAACTGTTGCTACCCCTCACCTTGGTTCTAG GGGCAATAAGCAGGTACCATTTCTTTTTGGCTTAAATGCCTTGGAGAAAACTGCAGGTCTTGTTATTCATTGGATATTTAGGAGAACGGGTCAACATCTT TTTCTCGTTGACAACGATGAGGGAAAACCTCCATTAGTTAAACGGATGATAGAAGATTATGGTGATTTATACTTCATGTCTGCACTACGGGCATTCAAAC GTAGGGTAGCCTACTCAAATGTGGGCTATGACCATATCGTAGGATGGAGAACATCCTCGATCAGGCGGAATAACGAACTTCCAAAGTGGGAGGATTGTTT GAATGAGAAATATCCACATGTAGTTCATGAAGAACATTGCAAAGCCTGTGACACTGACCAGGCTGATCTCTTCTCAACAGAAGCCGATAAACCTGACAAG ATAGAAGAGGAGCTAGTGGCAGGTTTGTCACGTGTGTCATGGGAAAAAGTAGATGTCAGCTTTCACTCTAGCAGGCAGAGATTTGCTGCTCATAGTGTTA TTCAGGTGAAAGACGAGAGCATGCACAGAGAAGGGGCAGATGTGGTACAGCATATGATCGACCATTTTGTCCTGTAA
AA sequence Show only first row Show all	>Lus10032496 pacid=23146291 polypeptide=Lus10032496 locus=Lus10032496.g ID=Lus10032496.BGIv1.0 annot-version=v1.0 MENGNGTVENAVCSSESVNGSRDVWSCNDSDSSTADHLVIMVHGILGSSSDWKYGAEQFVRNLLDKVFVHCSERNMSRLTLDGVDVMGERLAQEVLEVIA KKPNLRKISFVAHSVGGLVARYCIGKLYRPPRKENAEGPNEEELDSTIGGLEAVNFITVATPHLGSRGNKQVPFLFGLNALEKTAGLVIHWIFRRTGQHL FLVDNDEGKPPLVKRMIEDYGDLYFMSALRAFKRRVAYSNVGYDHIVGWRTSSIRRNNELPKWEDCLNEKYPHVVHEEHCKACDTDQADLFSTEADKPDK IEEELVAGLSRVSWEKVDVSFHSSRQRFAAHSVIQVKDESMHREGADVVQHMIDHFVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51180			alpha/beta-Hydrolases superfam...		Lus10032496 [exp]	0	1
AT5G51180			alpha/beta-Hydrolases superfam...		Lus10042993 [exp]	1.0	0.7340
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10002556 [exp]	7.9	0.7207
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Lus10042975 [exp]	8.2	0.6920
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10039039 [exp]	9.6	0.7281
AT4G18950			Integrin-linked protein kinase...		Lus10029277 [exp]	10.4	0.6819
AT1G25375			Metallo-hydrolase/oxidoreducta...		Lus10005109 [exp]	23.0	0.6766
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Lus10032478 [exp]	25.8	0.6874
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10019916 [exp]	30.7	0.6812
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10011853 [exp]	35.6	0.6754
					Lus10005948 [exp]	41.2	0.6464

Compare expression of checked genes

Lus10032496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.