Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51230 697 / 0 C2H2ZnF AtEMF2, CYR1, VEF2, EMF2 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3) AT4G16845 260 / 6e-80 VRN2 REDUCED VERNALIZATION RESPONSE 2, VEFS-Box of polycomb protein (.1.2) AT2G35670 112 / 2e-25 FIE2, FIS2 FERTILIZATION INDEPENDENT SEED 2, FERTILIZATION-INDEPENDENT ENDOSPERM 2, VEFS-Box of polycomb protein (.1) AT4G16810 101 / 2e-23 VEFS-Box of polycomb protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042997 [exp] 1183 / 0 AT5G51230 717 / 0.0 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G150450 [exp] 779 / 0 AT5G51230 707 / 0.0 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3) Potri.001G080200 [exp] 766 / 0 AT5G51230 703 / 0.0 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3) Potri.003G081400 [exp] 349 / 3e-114 AT4G16845 390 / 2e-133 REDUCED VERNALIZATION RESPONSE 2, VEFS-Box of polycomb protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09733 [flax] [poplar] VEFS-Box VEFS-Box of polycomb protein
Representative CDS sequence Show only first row Show all	>Lus10032500 pacid=23146414 polypeptide=Lus10032500 locus=Lus10032500.g ID=Lus10032500.BGIv1.0 annot-version=v1.0 ATGCCAGGAATCCCTTTGGTGGCTCGTGAAACTTCCTCGCATAGCCGAAGTGCGGATCAGATGTGCCGTGATGATGGTCGTGTGCGATTGTCTGCTGAAG AGGAAATGGCAGCTGAGGAAAGTCTCTCCACTTATTGTAAGCCCGTCGAGCTTTATAACATCCTCCAACGACGGGCTGTCGCCAATCCATTGTTTCTACA GAGGTGTTTGGAGTACAAGATACAGGCGAAGAATAAAAGAAGAATTCAAATGACAGTTTCATTGTCGACGGCTATTAATGGTGGCTCTCAATCTTCTAGC CCATTTCCTCTATACATTTTGTTGGCAAGACTAGTAACCGAGTCTCTGACTCCAGAGAAGCATTCTGCAGTCTTCCGCTTTAGCCGAGCATGCATTTTGA ATAACTTTGCTGGAGTTCAAGGGAGTATGCAAGGACAAGCAAATTTCTTACTTCCAGAATCTAATAAGTTAGCATCGGAAGCCAATGGAGGGTCACTGTC TCTCTTGCTTGTCAGCTTTGCTGGAGCTCAGAATTCTGCACATGGACTTGAATTAACCAAGAGTCATGTAGAAAATGTTGGAGGATGTTGCTTACTCGGC AAGATACAATTGGAGTCGCTCTATGCTTCGTGGGAGAAGTCTCCTAACTTAGCATGGGGACAAAGAGTAGAGGTTGCATCAGCTGTAGATATGTATTCAT GCTTCTTAAAGTTGAATTATTCGAATGCTGATAAAAGTGTATTCGTACAAATTCCAAAAGGTTCAGAGAATGATGCATCACACGTGCAAGTCAATGTATC TGCGGAAGAAGTTGGAGCCGGGGAGAAATCTCGCTATCATTCATACACATGCAGTGATGTTTCTTCTTCCTCATTGTCTCATATTATTAGGTTGAGGGCT GGAAATGTCGTTTTCAATTATAGGTATTACAATAATAAGTTGCAGAAGACTGAAGTAACTGAAGACTTTACTTGTCCATTTTGCTTGATAAAATGTGGAA GCTTTAAGGGTTTGAGATATCATTTGCCGGCCTCCCATGATCTCTTCAACTTTGAGTTTTGGGTAACTGAGGAATTCCAAGCGGTAAATATATCTGTTAA AACAGATGTTTGGAGACCTGAGGTTGTTGCTCGTGGCGTTGATCCAAAGCAGCAAACTTTTTCCTTTTGTTCAAAAAAAACCAGGCGCAGAAAACCGAAA AATGTGGTTCAACAAGTAAAGCATGTCTATCCTTTGATCTTCGAGTCAAACCACCATGCTGCAGCATGTGACCTACATGACAAGGCTAATGGTGGCAAGA AATTGGCGAACATAAGTGTTGGTGCTGCACAGTGCATAGGGAAAGTTTCTTCTCTCTTCGACGAAATAGGGGCTTCACGTTCTGGTGCACTAGCCCATCC AGATCCTGAATGTGTCCAGTCAGCAAACGATAACAATCTGATTCCTCCAGCCATGTTGCAATTCTCGAAAACCAAGAAGTTAGCTGTCGAGCGTTCTGAT CTTAAAAACCGCAGCCTTCTTCACAAACGACGATTTTTCCACTCACATAGAGCTCAGCCTATGGCGATCGAGCAAGTCTTATCGGATGTGGATAGTGAGG ATGAAGTCGACGACGATGTTGCAGATTTAGAAGATCGAAGGATGCTCGATGATTTTGTCGATGTGACCCAGGACGAGAAACGCATAATGCACTTGTGGAA CTCCTTTGTGAGAAAGCACAGGGTCCGGGCAGACGGCCATATCCCATGGGCGTGCGAGGCATTCACCAGGTTTCATTCGAAGACCCTCTTAGAAGATCCA TCCCTCCTTCGTGTCTGGAGACTGTTGATGGTGAAGCTGTGGAATCACGGGCTATTGGATCCACGTAGCATCAACAATTCCAACTTCATTCTGGAGGAAA TTCATAAGGAGTTGGAAGCAGGGGAAAGACTAGTTTAA
AA sequence Show only first row Show all	>Lus10032500 pacid=23146414 polypeptide=Lus10032500 locus=Lus10032500.g ID=Lus10032500.BGIv1.0 annot-version=v1.0 MPGIPLVARETSSHSRSADQMCRDDGRVRLSAEEEMAAEESLSTYCKPVELYNILQRRAVANPLFLQRCLEYKIQAKNKRRIQMTVSLSTAINGGSQSSS PFPLYILLARLVTESLTPEKHSAVFRFSRACILNNFAGVQGSMQGQANFLLPESNKLASEANGGSLSLLLVSFAGAQNSAHGLELTKSHVENVGGCCLLG KIQLESLYASWEKSPNLAWGQRVEVASAVDMYSCFLKLNYSNADKSVFVQIPKGSENDASHVQVNVSAEEVGAGEKSRYHSYTCSDVSSSSLSHIIRLRA GNVVFNYRYYNNKLQKTEVTEDFTCPFCLIKCGSFKGLRYHLPASHDLFNFEFWVTEEFQAVNISVKTDVWRPEVVARGVDPKQQTFSFCSKKTRRRKPK NVVQQVKHVYPLIFESNHHAAACDLHDKANGGKKLANISVGAAQCIGKVSSLFDEIGASRSGALAHPDPECVQSANDNNLIPPAMLQFSKTKKLAVERSD LKNRSLLHKRRFFHSHRAQPMAIEQVLSDVDSEDEVDDDVADLEDRRMLDDFVDVTQDEKRIMHLWNSFVRKHRVRADGHIPWACEAFTRFHSKTLLEDP SLLRVWRLLMVKLWNHGLLDPRSINNSNFILEEIHKELEAGERLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Lus10032500 [exp]	0	1
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10017479 [exp]	4.5	0.7554
AT1G51610			Cation efflux family protein (...		Lus10033367 [exp]	5.2	0.7383
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Lus10042997 [exp]	9.3	0.8054
AT1G55915			zinc ion binding (.1)		Lus10016607 [exp]	10.2	0.6725
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10016768 [exp]	11.5	0.7006
AT5G48600		ATSMC4, SMC4, A...	ARABIDOPSIS THALIANA STRUCTURA...		Lus10030681 [exp]	15.6	0.6703
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Lus10027766 [exp]	18.5	0.6779
AT3G33530			Transducin family protein / WD...		Lus10043261 [exp]	18.7	0.6873
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10013111 [exp]	19.4	0.7254
AT5G62760			P-loop containing nucleoside t...		Lus10004265 [exp]	23.7	0.7110

Compare expression of checked genes

Lus10032500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.