Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61630 130 / 1e-39 unknown protein AT5G07490 124 / 4e-37 unknown protein AT2G35658 57 / 2e-11 unknown protein AT5G20045 44 / 2e-06 unknown protein AT4G16840 37 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042998 [exp] 264 / 2e-92 AT5G07490 117 / 2e-34 unknown protein Lus10011000 [exp] 61 / 1e-12 AT2G35658 74 / 5e-18 unknown protein Lus10000594 [exp] 57 / 1e-11 AT2G35658 79 / 1e-20 unknown protein Lus10019440 [exp] 48 / 4e-08 AT5G20045 63 / 9e-15 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G080500 [exp] 157 / 3e-50 AT5G61630 155 / 2e-49 unknown protein Potri.003G081900 [exp] 67 / 2e-15 AT2G35658 84 / 3e-23 unknown protein Potri.001G152700 [exp] 66 / 3e-15 AT2G35658 81 / 1e-21 unknown protein Potri.008G015800 [exp] 64 / 3e-14 AT5G20045 57 / 3e-12 unknown protein Potri.008G015100 [exp] 58 / 4e-12 AT5G20045 52 / 3e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032501 pacid=23146316 polypeptide=Lus10032501 locus=Lus10032501.g ID=Lus10032501.BGIv1.0 annot-version=v1.0 ATGCACAGATCCGCAAGCTGGACGCGGGGCCCATCCGTTGAGTACTTCACACACTCGACGCCGACGATGCCATCTTCGAGCCTCCGGGGAACTGAAAACA GTGATCAGCTGCCCACGTACGATCCGATCGTGGAGATGGCCAAGAAGGAGAAGTCACGCCGTTTCGCCGAGAAAGCCGTCCACGTCATCCCCCTCGTCCT CCTCGTGTGCGGCTTCATCCTGTGGTTCTTTTGCAATCCCGATGTGGAGGTGGGATTGAAATTAAGGGAAATTGGGAGCAATAAGGTTGAAGGGCTGACG ATAGAAGGAGATATCGACAACGACAGCGATGGAACACAGACTGGATTCTTACCTGTTGATCCTTCCGACTCTAAGACCAAACCTCTTCGACGCCACCACC GAAAGCTTTACCAGATTTACATCCACTGA
AA sequence Show only first row Show all	>Lus10032501 pacid=23146316 polypeptide=Lus10032501 locus=Lus10032501.g ID=Lus10032501.BGIv1.0 annot-version=v1.0 MHRSASWTRGPSVEYFTHSTPTMPSSSLRGTENSDQLPTYDPIVEMAKKEKSRRFAEKAVHVIPLVLLVCGFILWFFCNPDVEVGLKLREIGSNKVEGLT IEGDIDNDSDGTQTGFLPVDPSDSKTKPLRRHHRKLYQIYIH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61630			unknown protein		Lus10032501 [exp]	0	1
AT3G22060			Receptor-like protein kinase-r...		Lus10012853 [exp]	6.7	0.6119
					Lus10006919 [exp]	13.0	0.5871
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10011944 [exp]	16.5	0.5831
AT1G53830		ATPME2	pectin methylesterase 2 (.1)		Lus10027556 [exp]	19.4	0.5781
AT5G01780			2-oxoglutarate-dependent dioxy...		Lus10009087 [exp]	20.4	0.5773
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10024050 [exp]	23.5	0.5730
					Lus10022805 [exp]	25.7	0.5726
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	27.4	0.5726
					Lus10011962 [exp]	29.1	0.5726
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10012601 [exp]	30.7	0.5726

Compare expression of checked genes

Lus10032501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.