Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07480 372 / 7e-129 KUOX1 KAR-UP oxidoreductase 1 (.1) AT3G60290 315 / 5e-106 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G44800 303 / 2e-101 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G36690 237 / 2e-75 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 206 / 9e-64 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 199 / 4e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 198 / 1e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G08640 169 / 1e-49 ATFLS1, FLS flavonol synthase 1 (.1.2) AT1G17010 169 / 2e-49 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 169 / 3e-49 ATSRG1, SRG1 senescence-related gene 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043000 [exp] 325 / 2e-112 AT5G07480 210 / 2e-67 KAR-UP oxidoreductase 1 (.1) Lus10042999 [exp] 285 / 3e-97 AT5G07480 183 / 6e-58 KAR-UP oxidoreductase 1 (.1) Lus10030185 [exp] 223 / 6e-70 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023890 [exp] 220 / 1e-68 AT2G36690 486 / 5e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 215 / 4e-67 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011002 [exp] 214 / 6e-67 AT2G44800 198 / 9e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014398 [exp] 215 / 1e-66 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 211 / 2e-65 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035782 [exp] 199 / 5e-61 AT5G24530 258 / 4e-84 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G080600 [exp] 434 / 8e-153 AT5G07480 453 / 9e-161 KAR-UP oxidoreductase 1 (.1) Potri.001G451700 [exp] 238 / 4e-76 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G231500 [exp] 238 / 2e-75 AT2G36690 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G029700 [exp] 233 / 1e-73 AT2G36690 478 / 1e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 226 / 3e-71 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G048700 [exp] 220 / 7e-69 AT2G36690 255 / 3e-82 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G048900 [exp] 220 / 1e-68 AT2G36690 250 / 5e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G106700 [exp] 214 / 9e-67 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451600 [exp] 211 / 2e-65 AT4G10500 406 / 5e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 209 / 6e-65 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10032502 pacid=23146317 polypeptide=Lus10032502 locus=Lus10032502.g ID=Lus10032502.BGIv1.0 annot-version=v1.0 ATGGATCATCCCAAGGAATCCCACTGCAGTAACTTCCACATGGGGAACACTGCTCAGGAACAAGCTCTACCTTATGTGCCCGATCGTTACGTTGTGCCTG ATCCGTCCGATCGTTCTTCCCCTTGTAATCCTACCGCTGAAATTCCCGTCATCGACTTGAGTGGGCTACGAGACGCTTCCCAGAGGACTAATGTCGTGAA TGAAATTGGAAAGGCTTCTCGCCAACTGGGTTTCTTCCAAGTTGTGAATCACGGGATAAAGCAGTCGGTGTTGGACGAAGCACTGGAAGCCGCCGATGAG TTCTTCAAGTTGCCGACGGGGGAGAAGGCCAAGCTCATGTCCAACGATGTTTACAATCCGGTGCGGTACGGTACCAGCATCAAAGATGGCATGGACAAAG TCCAGTTCTGGAGGGTATTCCTGAAACACTACGCTAATCCGCTCACCAACTGGATTCACCTCTGGCCCCAAAACCCGCCCAACTACAGAGAAAAAATCAG CAATTACTGCACGTCGGTGAGGAAGCTGACGACGGAGATAGCGGGAGCAATGACGGAGAGTCTTGGGCTGGGCCCATCGTACCTGGCCCAAAAACTGGAC GCAGGAATGCAAACAATTGTGGTCAACTGTTATCCGCCGTGTCCAAGCCCAGACCTCACATTGGGCCTGCCACCTCATTCGGACTACAGTTGTCTGACTG TAGTCCTCCAGACCACTTCGGGTCTAGAGATCCTCGACCAGAGGAACGCCACGTGGAAAGCGACATCCCATACTCCCGGCGCTCTCCTCGTACACGTGGG GGACCATTTCGAAGTGCTCAGCAACGGAATTTTCAAAAGCGTGGTTCATCGGGCCACTTTGAACTCGGAGAAGATGAGGATATCGATCGCCAGCTTGCAG AGCCTGGGAATGGATGATAAGATGGAAGTTGCGATGGAGCTTGTTGGTGACGGCGCCGGCGGTGAGGCTAGGTATAAAGGAAGCAGCTTCAGGGATTTCT TGGACCTTCTGTCTGAGAATGACATCGGTACTAAGAACTTCAAGAGCTTTATTGATACCCTCAGGATCGACAATTAA
AA sequence Show only first row Show all	>Lus10032502 pacid=23146317 polypeptide=Lus10032502 locus=Lus10032502.g ID=Lus10032502.BGIv1.0 annot-version=v1.0 MDHPKESHCSNFHMGNTAQEQALPYVPDRYVVPDPSDRSSPCNPTAEIPVIDLSGLRDASQRTNVVNEIGKASRQLGFFQVVNHGIKQSVLDEALEAADE FFKLPTGEKAKLMSNDVYNPVRYGTSIKDGMDKVQFWRVFLKHYANPLTNWIHLWPQNPPNYREKISNYCTSVRKLTTEIAGAMTESLGLGPSYLAQKLD AGMQTIVVNCYPPCPSPDLTLGLPPHSDYSCLTVVLQTTSGLEILDQRNATWKATSHTPGALLVHVGDHFEVLSNGIFKSVVHRATLNSEKMRISIASLQ SLGMDDKMEVAMELVGDGAGGEARYKGSSFRDFLDLLSENDIGTKNFKSFIDTLRIDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Lus10032502 [exp]	0	1

Compare expression of checked genes

Lus10032502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.