Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25130 340 / 1e-118 PMSR4 peptide met sulfoxide reductase 4 (.1) AT5G61640 329 / 3e-115 PMSR1, ATMSRA1 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) AT5G07470 320 / 7e-112 PMSR3, ATMSRA3 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 3, peptidemethionine sulfoxide reductase 3 (.1) AT5G07460 288 / 7e-99 PMSR2, ATMSRA2 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 2, peptidemethionine sulfoxide reductase 2 (.1) AT2G18030 109 / 1e-28 Peptide methionine sulfoxide reductase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043002 [exp] 443 / 2e-159 AT4G25130 346 / 5e-121 peptide met sulfoxide reductase 4 (.1) Lus10033039 [exp] 261 / 1e-88 AT5G61640 256 / 6e-88 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Lus10013673 [exp] 192 / 1e-61 AT5G07470 185 / 4e-60 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 3, peptidemethionine sulfoxide reductase 3 (.1) Lus10041922 [exp] 103 / 2e-26 AT2G18030 370 / 9e-131 Peptide methionine sulfoxide reductase family protein (.1.2) Lus10028467 [exp] 102 / 1e-25 AT2G18030 364 / 1e-128 Peptide methionine sulfoxide reductase family protein (.1.2) Lus10019755 [exp] 88 / 1e-19 AT5G13800 589 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G112268 [exp] 380 / 1e-134 AT4G25130 351 / 4e-123 peptide met sulfoxide reductase 4 (.1) Potri.012G115800 [exp] 375 / 2e-132 AT4G25130 351 / 3e-123 peptide met sulfoxide reductase 4 (.1) Potri.015G087600 [exp] 262 / 3e-89 AT5G61640 261 / 8e-90 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Potri.012G091100 [exp] 253 / 2e-85 AT5G61640 251 / 9e-86 ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE A1, peptidemethionine sulfoxide reductase 1 (.1) Potri.007G012900 [exp] 110 / 4e-29 AT2G18030 361 / 2e-127 Peptide methionine sulfoxide reductase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01625 [flax] [poplar] PMSR Peptide methionine sulfoxide reductase
Representative CDS sequence Show only first row Show all	>Lus10032504 pacid=23146267 polypeptide=Lus10032504 locus=Lus10032504.g ID=Lus10032504.BGIv1.0 annot-version=v1.0 ATGCTCCAAAGAGTATCATCCATCTCCACCGTCTCGCGGCCGGTCCTCTGCTTCTCCGCCTCCGCAGCATCTTCTTCTTCTTCTTCTTCTAATCCATTCA TCTCTTCTTTCCCCAAAACCCTCCAACAACACTCCCTCTCCAAACCTTTACTCTCCCGTCCTCGATTGTCCAAGCCCATGAACATCCTCAACAAACTCGG CTTCGGTTTCAAGTCGTCGCCGGACCCTTCCTCCATGGACCCGACGATTCCCCAGAGCCCAGACGATGACGTCCCCTCTGCCGGCCAGCAGTTCGCCCAA TTCGGAGCTGGGTGCTTCTGGGGAGTGGAATTGGCTTTCCAGAGAGTCCCAGGCGTTACCAAGACGGAAGTCGGGTATACGCAGGGTCTGCTTCATAGTC CTAGCTACCAGGATATCTGTACTGGTACCACCAGCCATTCTGAGGTTGTTAGGGTTCAGTATGATCCAAAGGAGTGTAGCTACGACTCCCTGCTTGATGT CTTCTGGGCTAGACATGACCCCACTACGCTCAATCGCCAGGGAAATGATGTGGGAACACAGTACAGATCCGGGATATACTATTATACCCCGGAACAGGAG GAAGCTGCAAAGGCGTCAAAGGAACGACATCAGAAGCTCTACAATCGAAACATTGTGACCGAGATTTTGCCGGCGAAGAAGTTCTACCGAGCTGAAGAGT ACCACCAGCAGTACCTTGCTAAAGGCGGCCGTATGGGATTGAAGCAGTCTGCTGAGAAGGGCTGTAACGATCCGATCAGATGCTATGGCTAA
AA sequence Show only first row Show all	>Lus10032504 pacid=23146267 polypeptide=Lus10032504 locus=Lus10032504.g ID=Lus10032504.BGIv1.0 annot-version=v1.0 MLQRVSSISTVSRPVLCFSASAASSSSSSSNPFISSFPKTLQQHSLSKPLLSRPRLSKPMNILNKLGFGFKSSPDPSSMDPTIPQSPDDDVPSAGQQFAQ FGAGCFWGVELAFQRVPGVTKTEVGYTQGLLHSPSYQDICTGTTSHSEVVRVQYDPKECSYDSLLDVFWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQE EAAKASKERHQKLYNRNIVTEILPAKKFYRAEEYHQQYLAKGGRMGLKQSAEKGCNDPIRCYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25130		PMSR4	peptide met sulfoxide reductas...		Lus10032504 [exp]	0	1
AT3G47070			unknown protein		Lus10040689 [exp]	1.4	0.9485
AT5G24460			unknown protein		Lus10015572 [exp]	2.2	0.9286
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032481 [exp]	2.8	0.9390
AT1G17160			pfkB-like carbohydrate kinase ...		Lus10026199 [exp]	4.4	0.8987
AT2G05620		PGR5	proton gradient regulation 5 (...		Lus10011777 [exp]	4.6	0.9303
AT3G21890	CO		B-box type zinc finger family ...		Lus10031583 [exp]	5.9	0.9198
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Lus10025579 [exp]	6.3	0.9296
AT4G00895			ATPase, F1 complex, OSCP/delta...		Lus10012618 [exp]	7.3	0.9268
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032482 [exp]	7.7	0.9160
AT3G18490			Eukaryotic aspartyl protease f...		Lus10042978 [exp]	7.7	0.9019

Compare expression of checked genes

Lus10032504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.