Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44740 220 / 6e-73 CYCP4;1 cyclin p4;1 (.1) AT5G61650 209 / 3e-68 CYCP4;2 CYCLIN P4;2 (.1) AT5G07450 194 / 3e-62 CYCP4;3 cyclin p4;3 (.1) AT3G60550 141 / 2e-41 CYCP3;2 cyclin p3;2 (.1) AT3G63120 140 / 3e-41 CYCP1;1 cyclin p1;1 (.1) AT3G21870 138 / 2e-40 CYCP2;1 cyclin p2;1 (.1) AT3G05327 135 / 1e-39 Cyclin family protein (.1) AT2G45080 129 / 7e-37 CYCP3;1 cyclin p3;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043003 [exp] 350 / 1e-123 AT2G44740 227 / 2e-75 cyclin p4;1 (.1) Lus10022038 [exp] 166 / 5e-51 AT3G63120 197 / 8e-64 cyclin p1;1 (.1) Lus10039697 [exp] 160 / 4e-49 AT3G21870 236 / 3e-79 cyclin p2;1 (.1) Lus10042582 [exp] 160 / 5e-49 AT3G63120 191 / 2e-61 cyclin p1;1 (.1) Lus10027148 [exp] 161 / 1e-48 AT3G21870 233 / 6e-77 cyclin p2;1 (.1) Lus10004475 [exp] 154 / 8e-47 AT3G05327 171 / 1e-53 Cyclin family protein (.1) Lus10029933 [exp] 153 / 3e-46 AT3G05327 172 / 3e-54 Cyclin family protein (.1) Lus10042873 [exp] 140 / 4e-41 AT3G60550 300 / 8e-104 cyclin p3;2 (.1) Lus10028174 [exp] 135 / 2e-39 AT2G45080 249 / 1e-84 cyclin p3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G050400 [exp] 248 / 6e-84 AT2G44740 285 / 8e-99 cyclin p4;1 (.1) Potri.012G114600 [exp] 240 / 3e-80 AT2G44740 277 / 2e-95 cyclin p4;1 (.1) Potri.015G112140 [exp] 236 / 2e-79 AT2G44740 274 / 1e-94 cyclin p4;1 (.1) Potri.002G052800 [exp] 167 / 2e-51 AT3G63120 219 / 1e-71 cyclin p1;1 (.1) Potri.005G209800 [exp] 165 / 5e-51 AT3G63120 223 / 7e-74 cyclin p1;1 (.1) Potri.007G121500 [exp] 158 / 3e-48 AT3G21870 228 / 5e-76 cyclin p2;1 (.1) Potri.013G023000 [exp] 147 / 2e-44 AT3G05327 194 / 4e-63 Cyclin family protein (.1) Potri.005G033600 [exp] 142 / 6e-42 AT3G05327 184 / 5e-59 Cyclin family protein (.1) Potri.014G066400 [exp] 138 / 2e-40 AT3G60550 343 / 3e-121 cyclin p3;2 (.1) Potri.002G143400 [exp] 138 / 3e-40 AT2G45080 324 / 1e-113 cyclin p3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF08613 [flax] [poplar] Cyclin Cyclin
Representative CDS sequence Show only first row Show all	>Lus10032505 pacid=23146419 polypeptide=Lus10032505 locus=Lus10032505.g ID=Lus10032505.BGIv1.0 annot-version=v1.0 ATGGCGGGAAGAGATCTGGAGGAGAGATATCCGCCGTCGACGCCCAAAGTGATAAGGTTCCTGTCTTGTCTGCTGCAGCGAGTGGCTCATTCCAATGATT TGAGAATCAAAACCCAAATTGGCGGCTCTTCTTCTTCCGCCGCAATCTCCTCCATCTTCCACGGTCTGACTCCGCCGTCAATTTCCATCCATAGCTACCT CGGCAGGATATTCAGCTACGCCAATTGTAGTCCTTCTTGCTTTGTCGTCGCCTATGTCTATCTGGATCGGTTCGTTCAGAAGCAGCCGTCTCTTCCCATC ACTTCTCTCAACGTCCATCGCCTCCTCATTACCAGCGTCTTGGTCTCCGTCAAGTTCATGGACGACATATACTACAACAATGCGTACTACGCAAAAGTAG GAGGGATCAGCAGAGCAGAGATGAACATGATGGAAGTGGATTTCCTGTTCGGGATAGGATTCGATTTAAACGTGACTCCAACCACCTTCCACACTTACTG CTCTCACCTCAACACCCTGCAGATGCCATTTCTCCAACCTCCTCCTAATTTACATGACCTTCTCCTACATCCAACTCCCGATAACATCATGCAGCCTACC GCATCAGCCGCCGTCGCCAGATCGTCATCAAAGCAGCAGCTACCACACCATTGTTGCCACAACGAAGACGACTCAGCTCACCATCAACAGCTTGCCGTTT GA
AA sequence Show only first row Show all	>Lus10032505 pacid=23146419 polypeptide=Lus10032505 locus=Lus10032505.g ID=Lus10032505.BGIv1.0 annot-version=v1.0 MAGRDLEERYPPSTPKVIRFLSCLLQRVAHSNDLRIKTQIGGSSSSAAISSIFHGLTPPSISIHSYLGRIFSYANCSPSCFVVAYVYLDRFVQKQPSLPI TSLNVHRLLITSVLVSVKFMDDIYYNNAYYAKVGGISRAEMNMMEVDFLFGIGFDLNVTPTTFHTYCSHLNTLQMPFLQPPPNLHDLLLHPTPDNIMQPT ASAAVARSSSKQQLPHHCCHNEDDSAHHQQLAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10032505 [exp]	0	1
AT1G47740			PPPDE putative thiol peptidase...		Lus10040485 [exp]	2.0	0.9339
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10043003 [exp]	2.2	0.9569
AT3G16850			Pectin lyase-like superfamily ...		Lus10016837 [exp]	5.1	0.9474
AT1G76240			Arabidopsis protein of unknown...		Lus10016005 [exp]	7.1	0.9420
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10026345 [exp]	7.3	0.9070
AT2G29390		ATSMO2-2, SMO2-...	Arabidopsis thaliana sterol 4-...		Lus10040739 [exp]	12.0	0.8910
AT2G20520		FLA6	FASCICLIN-like arabinogalactan...		Lus10017696 [exp]	12.2	0.9319
AT2G35880			TPX2 (targeting protein for Xk...		Lus10016193 [exp]	14.9	0.8587
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10027679 [exp]	15.0	0.9205
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	17.1	0.9305

Compare expression of checked genes

Lus10032505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.