Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043004 [exp] 46 / 3e-06 ND 47 / 8e-06
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032507 pacid=23146289 polypeptide=Lus10032507 locus=Lus10032507.g ID=Lus10032507.BGIv1.0 annot-version=v1.0 ATGTCACCTTCCTTCCTCTACTTTTTTCTTTTCCTCTTCTTCGTCCCAAACCTCTTTGTAGCTGCTCGCAACAAGATTGATCATCCGAACCATCAGATCA CAACCGGTCAAAAGATGGATCATCCCACGGCTCAGACCACTGGTTCATCCGGCTCGTCCCACGGACCCAATTGGGATTTCAGTTGGGGGTGGGGCTCTAC TCCAGGTACTGGTTGGGGTTATGGCTCTGGATCAGCTCGAACCCCTAATGGATTCGCGAGGGGCTCTGGCTACGGATTCGGGTCTGGCTCTGGATCCGGG TCCGGATCCGGCTATGGGTATAGTTACGGGTCCGGTGGCGGCGGTGTTCGTGCGGGTGGGTATGGCGCTGGAAGTGGGGGTTCCGGAGGCGGCACTCCGC CTGTCGACAGAAACCACCATGGCTGA
AA sequence Show only first row Show all	>Lus10032507 pacid=23146289 polypeptide=Lus10032507 locus=Lus10032507.g ID=Lus10032507.BGIv1.0 annot-version=v1.0 MSPSFLYFFLFLFFVPNLFVAARNKIDHPNHQITTGQKMDHPTAQTTGSSGSSHGPNWDFSWGWGSTPGTGWGYGSGSARTPNGFARGSGYGFGSGSGSG SGSGYGYSYGSGGGGVRAGGYGAGSGGSGGGTPPVDRNHHG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61660			glycine-rich protein (.1)		Lus10032507 [exp]	0	1
AT4G20880			ethylene-responsive nuclear pr...		Lus10038459 [exp]	6.0	0.8027
AT2G30933			Carbohydrate-binding X8 domain...		Lus10020765 [exp]	6.0	0.8220
AT5G17850			Sodium/calcium exchanger famil...		Lus10005673 [exp]	8.8	0.8650
AT3G06145			unknown protein		Lus10004420 [exp]	19.3	0.7820
AT1G11440			unknown protein		Lus10018397 [exp]	20.7	0.7619
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10004364 [exp]	20.8	0.8406
AT3G22970			Protein of unknown function (D...		Lus10003087 [exp]	27.6	0.7989
AT3G13480			unknown protein		Lus10013407 [exp]	28.2	0.8385
AT5G01090			Concanavalin A-like lectin fam...		Lus10035542 [exp]	28.8	0.8310
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10004500 [exp]	30.6	0.8125

Compare expression of checked genes

Lus10032507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.