Plant FIBer expression Database

Lus10032508 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G51150 728 / 0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
AT1G34630 96 / 1e-20 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043005
[exp]
1006 / 0 AT5G51150 780 / 0.0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Lus10034188
[exp]
94 / 4e-20 AT1G34630 681 / 0.0 unknown protein
Lus10043395
[exp]
61 / 9e-10 AT1G34630 374 / 2e-128 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G111200
[exp]
774 / 0 AT5G51150 767 / 0.0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Potri.012G113700
[exp]
756 / 0 AT5G51150 744 / 0.0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Potri.002G096500
[exp]
102 / 5e-23 AT1G34630 667 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10032508 pacid=23146281 polypeptide=Lus10032508 locus=Lus10032508.g ID=Lus10032508.BGIv1.0 annot-version=v1.0
ATGCCTTCTCCCCTGTCCGAATCTCCCACTCCGCCGCCCTCTCCTCCCCCACCGCCCGCCGCCGCCGCCAACGACAATTCCGATGCCGAGCGCCGCCTTC
GCGAGGCTGAGGAGCGCCTCCGCGATGCCATACAGGAGCTGCAGCGTCGTCAGCGCAAAGCCGCCCTCGGTCTAGCTGGCTATCCTCCCTGTGATCATCC
TCCCGACGAATCCTGCGTCGCTCATGCTATTGGAAATCTCTGCCAGAGCTTCCTCCTCTCCTATGGCGTCCGAGTTGGGATCGGTATCTTGCTTCGCGCT
TTCAAGCTTGCCAAGGGCCAGTCCTACTCTTCCTTGCTCGATCTCAAGCAACTAGTATCGGAGAAAGATCTGATTGTAAGAGAAGAGGCTTGCCGTATTG
GTTTGCTTTTCGGTGGATTTACGGGATCTTATCATGCGCTTAGATGTTTGTTAAGGAAATGGCGAAAGAAGGAGACTCCTTTCAATGCAATTTTAAGCAT
GATTTTAGCAGGTTCTGTTGCTGGATTGTCGGTTTTAGCATTGGATGATCCCAACCGTAGGCGCACACTTGCTCTTTATCTTTTGGCTAGATTAGCTCAG
TGTGCGTATAATTCTGCTAAATCTAAGAATAAGTTTCACCTTTGGGGTAGCCATTGGAGACATGGCGACACATTGCTCTTCGCTCTCGCATGTGCCCAGG
TTATGTATGCATTTGTGATGCGCCCAGAGAGTTTACCAAAAGCATATCATGACTTCATTCAGAAAACCGGGCCAGTTGCACAGCCTGTCTACGAGTCTGT
AAGAGAAAGTTGTAGAGGTGGCCCTGTGGACGTTGCAGCACTATCAGCTTATTTAGCTACAAAGGGAAAGCTAGCCTCTGTCAAGTTGGAAGAGTTCCCT
TCCATCATCCCATGTTCTATTATTCATCCGGGTACAGATTCGTGTTCAGTTCAACACGGTAATGCAGCATATGCTACATTTAGGAAAACATTCCCTCTCT
ATTTCTCATTGACTTTCGTGCCTTACGTCGTGCTGCACCTGCAAAAGGTATCATCTTTGACTCCATTGATCTTTTGCCTTCTAATATTACCTGTTGGAAG
GAAGAAAATGTCTGAATATCTATGCGTTGTTCTGTCACCTGATGCCGTTATACCTATAAAGTTCATGGATGCTCCTGCACGTACGTGTTGGCTTGCTCTT
AGGGATGCTGTTCGCTCAACGACATTCTTGTCTGCATTTGTTGGGATATTCCAGAGTGTGATTTGTCTGCATCGAAAAGTTGCTGTCAAAGACCACAAGC
TGTTGTACTGGATATCAGGTGGATTATCTGCACTTTCTGTACTATTCGAGAAAAAATCCAGGCGCGCAGAACTTGCCTTGTATGTTCTTCCCCGTGCTGG
AGATTCATTGTGGTACATTTTAGTCAACCGCCACATAGTTCCGAATTTAAAGAATGCCGAGGTAGCACTATTTTGTGCTTGCATGGGCGGCATTATGTAT
TACTTGGAACATGAGCCAGACACCATGGCTCCCTTCCTCAGGGGTCTAATCCGCCGCTTCCTGGCCAGCAGAATCAGCAGCCCAAGCCCTTCGTCGAATC
GCAGTGCATCATCTTACACATACTTGCAGACTCTCGATTCAACAAAGAAGCCAAAATCTCAGGATGGCAAAGAAGTTGAAGCTTCTCCTCATAAATACAA
CCTTGAGTCCATTCCAGGTCTCTAA
AA sequence
>Lus10032508 pacid=23146281 polypeptide=Lus10032508 locus=Lus10032508.g ID=Lus10032508.BGIv1.0 annot-version=v1.0
MPSPLSESPTPPPSPPPPPAAAANDNSDAERRLREAEERLRDAIQELQRRQRKAALGLAGYPPCDHPPDESCVAHAIGNLCQSFLLSYGVRVGIGILLRA
FKLAKGQSYSSLLDLKQLVSEKDLIVREEACRIGLLFGGFTGSYHALRCLLRKWRKKETPFNAILSMILAGSVAGLSVLALDDPNRRRTLALYLLARLAQ
CAYNSAKSKNKFHLWGSHWRHGDTLLFALACAQVMYAFVMRPESLPKAYHDFIQKTGPVAQPVYESVRESCRGGPVDVAALSAYLATKGKLASVKLEEFP
SIIPCSIIHPGTDSCSVQHGNAAYATFRKTFPLYFSLTFVPYVVLHLQKVSSLTPLIFCLLILPVGRKKMSEYLCVVLSPDAVIPIKFMDAPARTCWLAL
RDAVRSTTFLSAFVGIFQSVICLHRKVAVKDHKLLYWISGGLSALSVLFEKKSRRAELALYVLPRAGDSLWYILVNRHIVPNLKNAEVALFCACMGGIMY
YLEHEPDTMAPFLRGLIRRFLASRISSPSPSSNRSASSYTYLQTLDSTKKPKSQDGKEVEASPHKYNLESIPGL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G51150 Mitochondrial import inner mem... Lus10032508
[exp]
0 1
AT5G17560 BolA-like family protein (.1) Lus10020347
[exp]
1.7 0.8635
AT5G20680 TBL16 TRICHOME BIREFRINGENCE-LIKE 16... Lus10039914
[exp]
4.5 0.8629
AT2G30360 PKS5, CIPK11, S... SNF1-RELATED PROTEIN KINASE 3.... Lus10024188
[exp]
5.2 0.8303
AT1G21790 TRAM, LAG1 and CLN8 (TLC) lipi... Lus10025673
[exp]
6.7 0.8524
AT1G19220 ARF IAA22, ARF11, A... indole-3-acetic acid inducible... Lus10033597
[exp]
8.8 0.8224
AT5G51050 APC2 ATP/phosphate carrier 2, Mitoc... Lus10043022
[exp]
9.4 0.8499
AT1G06730 pfkB-like carbohydrate kinase ... Lus10024866
[exp]
9.5 0.8431
AT5G24318 O-Glycosyl hydrolases family 1... Lus10004962
[exp]
10.0 0.8461
AT2G42520 P-loop containing nucleoside t... Lus10000849
[exp]
10.9 0.8373
AT3G25500 AHF1, AFH1, ATF... ARABIDOPSIS THALIANA FORMIN HO... Lus10002149
[exp]
12.3 0.8339

Lus10032508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.