Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07440 773 / 0 GDH2 glutamate dehydrogenase 2 (.1.2.3) AT5G18170 708 / 0 GDH1 glutamate dehydrogenase 1 (.1) AT3G03910 697 / 0 GDH3 glutamate dehydrogenase 3 (.1) AT5G51120 249 / 2e-78 PABN1, ATPABN1 polyadenylate-binding protein 1 (.1.2.3) AT5G10350 235 / 2e-73 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT5G65260 229 / 7e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G51720 135 / 3e-33 Amino acid dehydrogenase family protein (.1) AT3G12640 64 / 3e-10 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G16940 60 / 5e-09 Splicing factor, CC1-like (.1.2.3) AT3G55460 55 / 5e-08 SCL30, At-SCL30 SC35-like splicing factor 30 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043007 [exp] 722 / 0 AT5G07440 649 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Lus10005697 [exp] 712 / 0 AT5G18170 780 / 0.0 glutamate dehydrogenase 1 (.1) Lus10020288 [exp] 711 / 0 AT5G18170 780 / 0.0 glutamate dehydrogenase 1 (.1) Lus10003858 [exp] 702 / 0 AT5G18170 782 / 0.0 glutamate dehydrogenase 1 (.1) Lus10043008 [exp] 321 / 3e-106 AT5G65260 278 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032510 [exp] 302 / 7e-99 AT5G65260 278 / 2e-95 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10009323 [exp] 229 / 2e-71 AT5G65260 268 / 2e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015840 [exp] 225 / 5e-70 AT5G65260 261 / 9e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10006872 [exp] 135 / 3e-33 AT1G51720 1019 / 0.0 Amino acid dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G111000 [exp] 777 / 0 AT5G07440 773 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Potri.012G113500 [exp] 766 / 0 AT5G07440 766 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Potri.013G058300 [exp] 700 / 0 AT5G18170 787 / 0.0 glutamate dehydrogenase 1 (.1) Potri.019G034800 [exp] 698 / 0 AT5G18170 783 / 0.0 glutamate dehydrogenase 1 (.1) Potri.012G115100 [exp] 281 / 1e-90 AT5G65260 271 / 5e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G110800 [exp] 278 / 2e-89 AT5G51120 266 / 1e-90 polyadenylate-binding protein 1 (.1.2.3) Potri.005G073200 [exp] 245 / 5e-77 AT5G10350 292 / 2e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.007G095800 [exp] 244 / 7e-77 AT5G10350 285 / 3e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.017G051600 [exp] 241 / 1e-75 AT5G65260 288 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G311600 [exp] 220 / 8e-68 AT5G65260 238 / 2e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF02812 [flax] [poplar] ELFV_dehydrog_N Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CL0063 [flax] [poplar] NADP_Rossmann PF00208 [flax] [poplar] ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10032509 pacid=23146321 polypeptide=Lus10032509 locus=Lus10032509.g ID=Lus10032509.BGIv1.0 annot-version=v1.0 ATGGATCAGCACGCCGAACACGATTACGAACAGGAGCACGAGGAAGAAGAGGTTTACGGCGGCGAAATCCCCTACGAGGGAGACATGGAAGACGATGTAG ACATGACTAATAGACCTGAAGACGACGAGAACACTGACAGGAGTGCGAAGGAACTGGAGGATATGAAGAAGAGGCTGAAAGAGATTGAAGAAGAAGCTGG AGCTCTTCGTGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGCGCTGTCCAAGATCCCTCGGGTTCTTCTGCATCTTTGGCTGAAAAGGAGGAAGTGGAT GCGCGCTCAATATATGTTGGCAATGTAGACTATGCTTGCACTCCTGAAGAAGTTCAGCAGCATTTTCAATCTTGCGGAACAGTCAACAGGGTGACCATTT TGACTGACAAGTTTGGCCAGCCAAAGGGTTTTGCATATGTTGAGTTTGTGGAGGTTGATGCTGTCCAGAATGCACTACTGCTAAATGAATCTGAATTGCA TGGCCGTCAACTCAAGGTATCTGCTAAGAGAACAAACGTTCCTGGAATGAAGCAATTCCGTGGAAGGAGGCCCAACCCTAATTTCAGATTCCGAAGGCCA TTCTTGCCTGTTCCTTTCTATCAGCCATATGGCTATGGTGAATTTGGTCAAGTTGTTGGATGGGCTGATGAGAGCAGTATGGCAGAGCCTAACCCCCCTG TCTTCCCCTCTAACTGCATCATCACTCATTTCTTCGATCCCAACCCAGCAGCAGCACCCATGAATGCTCTTGTTGCCACCAACCGTAATTTTCGTGCTGC AGCTCGGCTTCTTGGGTTGGATTCCAAAGTGGAAAAGAGCCTTCTGATCCCTTTCAGAGAGATCAAGGTGGAGTGCACTATCCCGAAAGATGATGGAACA CTGGTATCCTACATTGGCTTCAGAGTGCAACACGACAACTCGAGAGGACCCATGAAGGGAGGAATCAGATATCATCCTGAGGTTGACCCAGATGAGGTGA ACGCATTGGCTCAGCTGATGACATGGAAGAGTGCAGTGGCTGATATTCCTTACGGTGGAGCCAAAGGTGGAATCGGATGCACTCCGAGGGATTTGAGTAC AAGCGAGTTGGAAAGGCTAACTCGCGTCTTCACTCAGAAGATCCACGACCTTATCGGTACCCACACTGACGTTCCCGCTCCAGACATGGGCACTAATGCT CAGACCATGGCATGGATATTGGATGAGTACTCAAAGTTTCATGGTCACTCCCCAGCAGTTGTCACAGGAAAGCCTATTGATCTCGGCGGGTCACTGGGTA GGGAAGCTGCAACAGGTCGCGGGGTTGTTTTCGCTACAGAAGCCATGCTTGCTGAGTATGGCAAGTCCATTGAAGGTCTGACATTTGTGATTCAGGGTTT TGGTAATGTGGGGTCATGGGCAGCAAAGATCTTCCATGAGAAAGGTGGAAAGGTTATAGCAGTGAGTGACATTACTGGTGCTGTTAGGAACCCAGATGGG ATTGACATACCTGCAATGATTGCATTCAAGGAATCCACTGGTAGTTTGACCAATTTCCCAGGAGCAGATTCCATGAACCCTAATGAACTTCTTGTACATG AGTGTGATGTCCTGGTTCCTTGTGCATTGGGAGGAGTCTTGAACAAAGAAAATGCTACTCATGTAAAATCCAAATACATTATAGAGGCAGCAAATCATCC AACTGATCCAGAAGCAGATGAGATTCTATCAAAGAAAGGAGTGGTTATACTCCCAGATATCTATGCAAATGCTGGAGGTGTTACTGTCAGTTACTTCGAA TGGGTTCAGAACATTCAAGGATTCATGTGGGAAGAGGAGCAGGTGAATAAGGAACTGAAGAAGTACATGACTCGAGCTTTCAAGAACATCAAGGGAATGT GCCAAACGCACGAATGCAACCTTCGGATGGGGGCGTTTACACTCGGATTGAATCGGGTCGCCAGAGCCACCCTGTTAAGAGGATGGGAAGCTTGA
AA sequence Show only first row Show all	>Lus10032509 pacid=23146321 polypeptide=Lus10032509 locus=Lus10032509.g ID=Lus10032509.BGIv1.0 annot-version=v1.0 MDQHAEHDYEQEHEEEEVYGGEIPYEGDMEDDVDMTNRPEDDENTDRSAKELEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDPSGSSASLAEKEEVD ARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQFRGRRPNPNFRFRRP FLPVPFYQPYGYGEFGQVVGWADESSMAEPNPPVFPSNCIITHFFDPNPAAAPMNALVATNRNFRAAARLLGLDSKVEKSLLIPFREIKVECTIPKDDGT LVSYIGFRVQHDNSRGPMKGGIRYHPEVDPDEVNALAQLMTWKSAVADIPYGGAKGGIGCTPRDLSTSELERLTRVFTQKIHDLIGTHTDVPAPDMGTNA QTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVFATEAMLAEYGKSIEGLTFVIQGFGNVGSWAAKIFHEKGGKVIAVSDITGAVRNPDG IDIPAMIAFKESTGSLTNFPGADSMNPNELLVHECDVLVPCALGGVLNKENATHVKSKYIIEAANHPTDPEADEILSKKGVVILPDIYANAGGVTVSYFE WVQNIQGFMWEEEQVNKELKKYMTRAFKNIKGMCQTHECNLRMGAFTLGLNRVARATLLRGWEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07440		GDH2	glutamate dehydrogenase 2 (.1....		Lus10032509 [exp]	0	1
AT5G40230			nodulin MtN21 /EamA-like trans...		Lus10033412 [exp]	4.5	0.9560
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	7.1	0.9615
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	12.1	0.9576
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10015377 [exp]	13.8	0.9220
AT5G41810			unknown protein		Lus10003901 [exp]	14.7	0.9576
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Lus10042174 [exp]	15.7	0.9514
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022190 [exp]	16.1	0.9511
					Lus10043397 [exp]	16.9	0.9444
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10032006 [exp]	17.4	0.9510
					Lus10017917 [exp]	17.6	0.9516

Compare expression of checked genes

Lus10032509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.