Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51120 244 / 4e-82 PABN1, ATPABN1 polyadenylate-binding protein 1 (.1.2.3) AT5G10350 227 / 1e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT5G65260 224 / 4e-74 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G12640 63 / 2e-11 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G16940 57 / 1e-09 Splicing factor, CC1-like (.1.2.3) AT2G36660 56 / 4e-09 PAB7 poly(A) binding protein 7 (.1) AT3G23830 51 / 3e-08 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT3G55460 50 / 2e-07 SCL30, At-SCL30 SC35-like splicing factor 30 (.1) AT1G74230 50 / 2e-07 GR-RBP5 glycine-rich RNA-binding protein 5 (.1) AT3G10400 49 / 5e-07 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043008 [exp] 296 / 9e-103 AT5G65260 278 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032509 [exp] 304 / 3e-100 AT5G07440 771 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Lus10009323 [exp] 225 / 3e-75 AT5G65260 268 / 2e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015840 [exp] 219 / 4e-73 AT5G65260 261 / 9e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10037701 [exp] 74 / 6e-15 AT3G12640 412 / 2e-135 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015696 [exp] 72 / 2e-14 AT3G12640 417 / 1e-136 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10034466 [exp] 60 / 2e-10 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10025075 [exp] 60 / 2e-10 AT2G16940 565 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10018277 [exp] 54 / 3e-08 AT4G19610 770 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G115100 [exp] 277 / 4e-95 AT5G65260 271 / 5e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G110800 [exp] 276 / 1e-94 AT5G51120 266 / 1e-90 polyadenylate-binding protein 1 (.1.2.3) Potri.017G051600 [exp] 241 / 3e-81 AT5G65260 288 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G095800 [exp] 237 / 1e-79 AT5G10350 285 / 3e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.005G073200 [exp] 235 / 7e-79 AT5G10350 292 / 2e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.001G311600 [exp] 223 / 3e-74 AT5G65260 238 / 2e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G145050 [exp] 82 / 6e-19 AT2G24350 107 / 4e-27 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G063800 [exp] 69 / 2e-13 AT3G12640 418 / 6e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G269200 [exp] 68 / 4e-13 AT3G12640 432 / 3e-143 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G177000 [exp] 59 / 3e-10 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10032510 pacid=23146221 polypeptide=Lus10032510 locus=Lus10032510.g ID=Lus10032510.BGIv1.0 annot-version=v1.0 ATGGATCAGCACGGAGATCACGAGTATGAACATGAGCACGAGGAAGAAGAGGTGTACGGGGGCGAAATCCCTTACGAGGGCGACATGGAAGACGACGTCG ACATGGCTTCCAGACCTGAAGAGGACGACAACACTGAACGCAGTGCCAAGGAATTGGAGGATATGAAGAAGAGGCTGAAAGAGATCGAAGAAGAAGCTGG AGCTCTTCGTGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGCGCTATCCAAGGTTCTTCTGCATCTTTGGCTGAAAAAGAGGAAGTGGATGCCCGCTCA ATTTATGTTGGCAATGTAGACTATGCTTCCACTCCTGAAGAAGTTCAGCAGCATTTTCAGTCTTGCGGAACAGTCAACAGGGTGACAATCTTGACTGACA AGTTTGGCCAGCCAAAGGGTTTTGCATATGTTGAGTTCGTGGAGGTTGATGCTGTACAAAATGCCGTACTACTAAATGAATCTGAATTGCATGGCCGTCA ATTGAAGGTATCCGCTAAGAGAACAAATGTTCCTGGAATGAAGCAATTTCGAGGAAGGCGGCCCAACCCTTATTTTAGATTCCGAAGGCCTTTCATGCCC GTTCCCTTCTATCAACCATATGGCTACGGGTCAGTATTAAGATTTTTACTACCGCTTGGCTGA
AA sequence Show only first row Show all	>Lus10032510 pacid=23146221 polypeptide=Lus10032510 locus=Lus10032510.g ID=Lus10032510.BGIv1.0 annot-version=v1.0 MDQHGDHEYEHEHEEEEVYGGEIPYEGDMEDDVDMASRPEEDDNTERSAKELEDMKKRLKEIEEEAGALREMQAKVEKEMGAIQGSSASLAEKEEVDARS IYVGNVDYASTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNAVLLNESELHGRQLKVSAKRTNVPGMKQFRGRRPNPYFRFRRPFMP VPFYQPYGYGSVLRFLLPLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10032510 [exp]	0	1
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10020894 [exp]	2.0	0.8372
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10026093 [exp]	2.2	0.8308
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10022556 [exp]	2.2	0.8400
AT2G42520			P-loop containing nucleoside t...		Lus10000849 [exp]	7.5	0.8356
AT1G76400			Ribophorin I (.1)		Lus10016038 [exp]	11.5	0.8348
AT4G00090			Transducin/WD40 repeat-like su...		Lus10004027 [exp]	12.4	0.7980
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10008739 [exp]	14.2	0.8148
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10011477 [exp]	14.5	0.8240
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10002482 [exp]	15.9	0.8038
AT1G24265			Protein of unknown function (D...		Lus10003127 [exp]	17.7	0.8119

Compare expression of checked genes

Lus10032510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.