Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22410 303 / 6e-102 RHS18 root hair specific 18 (.1) AT5G17820 283 / 1e-94 Peroxidase superfamily protein (.1) AT3G03670 263 / 2e-86 Peroxidase superfamily protein (.1) AT4G11290 248 / 1e-80 Peroxidase superfamily protein (.1) AT4G26010 246 / 4e-80 Peroxidase superfamily protein (.1) AT3G32980 246 / 3e-79 Peroxidase superfamily protein (.1) AT5G64100 243 / 3e-78 Peroxidase superfamily protein (.1) AT5G24070 241 / 7e-78 Peroxidase superfamily protein (.1) AT1G05260 241 / 9e-78 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT5G64120 241 / 1e-77 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043010 [exp] 660 / 0 AT5G22410 300 / 9e-101 root hair specific 18 (.1) Lus10004859 [exp] 362 / 2e-125 AT5G22410 309 / 1e-104 root hair specific 18 (.1) Lus10005679 [exp] 283 / 3e-94 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1) Lus10018375 [exp] 276 / 2e-91 AT5G17820 293 / 1e-98 Peroxidase superfamily protein (.1) Lus10013631 [exp] 265 / 7e-87 AT5G17820 331 / 2e-113 Peroxidase superfamily protein (.1) Lus10001324 [exp] 263 / 2e-86 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10020312 [exp] 275 / 8e-86 AT1G04170 845 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10032926 [exp] 259 / 1e-84 AT1G05260 292 / 5e-98 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10012684 [exp] 249 / 6e-81 AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G110200 [exp] 464 / 9e-166 AT5G22410 340 / 1e-116 root hair specific 18 (.1) Potri.001G218450 [exp] 308 / 1e-103 AT5G22410 280 / 1e-92 root hair specific 18 (.1) Potri.001G218500 [exp] 308 / 1e-103 AT5G22410 280 / 1e-92 root hair specific 18 (.1) Potri.013G066800 [exp] 278 / 5e-92 AT4G26010 360 / 1e-124 Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 260 / 2e-85 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.012G006800 [exp] 260 / 3e-85 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.006G069600 [exp] 253 / 1e-82 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.001G011200 [exp] 253 / 2e-82 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.018G131600 [exp] 249 / 3e-81 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.001G011000 [exp] 249 / 7e-81 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10032511 pacid=23146332 polypeptide=Lus10032511 locus=Lus10032511.g ID=Lus10032511.BGIv1.0 annot-version=v1.0 ATGATGACCAAGGAGACAGCACTTGCTGGGTTTATGTTGGGGCTGCTACTGTCAGGAGATCCGTTGATTTGCTATGGTGCACTCCAAGTAGGATTCTACA GAGGCAAATGTGGGTTCGCTGATGTGGAAACCATCGTCGGAGGCGTCGTTTCGTCTCACCTCTTCAGAGACCCTACCATCCTCGCTTCCCTTATCCGACT CCATTTCCACGACTGTTTCGTCAATGGCTGCGATGCGTCCATCCTTCTGGATGGTGCGGACACCGAGAAAACAGCTTCACCTAATCACAGCGTCAGAGGT TACGAGATTATCGACCAAGCTAAGGCCGCCGTCGACAAAATCTGTCCCGGTGTCGTTTCTTGTGCTGACCTCATCGCCATTGCCGCCCGCGATGCAGTTT TCCTCAGTGGAGGAGGGATATACAGAGTCCAAACTGGGAGAAAAGACGGGCTGGTTTCGTCTGCAGATATAGCAAACGTGACGCTTCCAGGGCCTTCCAT TACCGTCCCGCAGGCCGTTGCTGCATTTGCTGATAAGGGTCTCACCGCTGTTGACATGGTGCTCCTTCTAGGAGCTCATTCAGTTGGAGTAGCACACTGC TCTTTCCTGGACGAACGGATCCACAATTTCAGGGGCAGCGGCAGACCCGACCCGTCAATGGACCAATTCACGGTCAATACCTTGAGATCAAGGTGCCCCA TCAACTCAATCGAGAACACGGTCAACCTTGACCAGAATCCCTTCAGCCCGTTTGTGCTGGACAATTCCTACTACCAGAACATACTGTTGCGGCGAGGGGT TCTCCAGATTGACCAGGAGCTTGGAATGAACAGATTCACCCGTTCAATAGTTGCGAATTTGGCCGGTGCGATCGATTTTCCGGCTCGGTTTGGTGCGGCT ATGGTCCGCCTAGGGGCTGTTGGTGTTCTTACGGGGACTCAGGGTGAGGTTAGGAGGTCTTGCAGAGTGGTTAACAAAGTTGTTAGCAAAGATGAATCTG GCTAG
AA sequence Show only first row Show all	>Lus10032511 pacid=23146332 polypeptide=Lus10032511 locus=Lus10032511.g ID=Lus10032511.BGIv1.0 annot-version=v1.0 MMTKETALAGFMLGLLLSGDPLICYGALQVGFYRGKCGFADVETIVGGVVSSHLFRDPTILASLIRLHFHDCFVNGCDASILLDGADTEKTASPNHSVRG YEIIDQAKAAVDKICPGVVSCADLIAIAARDAVFLSGGGIYRVQTGRKDGLVSSADIANVTLPGPSITVPQAVAAFADKGLTAVDMVLLLGAHSVGVAHC SFLDERIHNFRGSGRPDPSMDQFTVNTLRSRCPINSIENTVNLDQNPFSPFVLDNSYYQNILLRRGVLQIDQELGMNRFTRSIVANLAGAIDFPARFGAA MVRLGAVGVLTGTQGEVRRSCRVVNKVVSKDESG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10032511 [exp]	0	1
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Lus10006930 [exp]	5.9	0.7576
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10039094 [exp]	8.1	0.7948
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10012228 [exp]	13.3	0.7965
AT4G26330		ATSBT3.18, UNE1...	UNFERTILIZED EMBRYO SAC 17, Su...		Lus10029569 [exp]	18.0	0.6642
					Lus10027424 [exp]	20.7	0.6452
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10030967 [exp]	24.4	0.7717
					Lus10039628 [exp]	25.3	0.7458
AT3G24110			Calcium-binding EF-hand family...		Lus10007131 [exp]	27.6	0.6578
AT2G38780			unknown protein		Lus10019776 [exp]	27.7	0.7629
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10038158 [exp]	28.2	0.7694

Compare expression of checked genes

Lus10032511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.