Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67570 95 / 3e-24 Protein of unknown function (DUF3537) (.1) AT3G20300 61 / 4e-12 Protein of unknown function (DUF3537) (.1) AT2G21080 57 / 1e-10 unknown protein AT4G22270 53 / 3e-09 ATMRB1 ARABIDOPSIS MEMBRANE RELATED BIGGER1, Protein of unknown function (DUF3537) (.1) AT1G50630 44 / 3e-06 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2) AT4G03820 42 / 1e-05 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043011 [exp] 201 / 1e-64 AT1G67570 404 / 2e-138 Protein of unknown function (DUF3537) (.1) Lus10011371 [exp] 110 / 5e-30 AT1G67570 529 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10006430 [exp] 109 / 2e-29 AT1G67570 435 / 3e-150 Protein of unknown function (DUF3537) (.1) Lus10032513 [exp] 74 / 1e-16 AT1G67570 319 / 4e-106 Protein of unknown function (DUF3537) (.1) Lus10009722 [exp] 59 / 2e-11 AT3G20300 626 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10036448 [exp] 58 / 5e-11 AT2G21080 450 / 5e-157 unknown protein Lus10002334 [exp] 56 / 3e-10 AT3G20300 616 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10024308 [exp] 49 / 7e-08 AT3G20300 473 / 5e-165 Protein of unknown function (DUF3537) (.1) Lus10033919 [exp] 49 / 9e-08 AT3G20300 476 / 2e-166 Protein of unknown function (DUF3537) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G092200 [exp] 135 / 3e-39 AT1G67570 405 / 8e-139 Protein of unknown function (DUF3537) (.1) Potri.012G094700 [exp] 115 / 7e-32 AT1G67570 417 / 2e-143 Protein of unknown function (DUF3537) (.1) Potri.008G178100 [exp] 112 / 1e-30 AT1G67570 491 / 3e-172 Protein of unknown function (DUF3537) (.1) Potri.018G002700 [exp] 57 / 7e-11 AT2G21080 447 / 9e-156 unknown protein Potri.006G279200 [exp] 57 / 1e-10 AT2G21080 453 / 6e-158 unknown protein Potri.001G356200 [exp] 55 / 5e-10 AT3G20300 613 / 0.0 Protein of unknown function (DUF3537) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12056 [flax] [poplar] DUF3537 Protein of unknown function (DUF3537)
Representative CDS sequence Show only first row Show all	>Lus10032512 pacid=23146313 polypeptide=Lus10032512 locus=Lus10032512.g ID=Lus10032512.BGIv1.0 annot-version=v1.0 ATGGCAATAAGCACCAATGGCGATGGTAATGGGGCCCCTCTTCCCACTTCCTCGAACTTCTTCCACCAGACTTACTCGGAGAGCGATTTAGAGGCAGGTG ATTATGTGCCGACGCCTACAAATACTGCATTGTCTTCCTATCAGAAGAGACAAGCTTTCGTAATGTACCTCATGGCGAACCCGGGTGGGTTTACAGTCTT TGGGTGGAGAATAGACCGAGCTTTGGTGAATACCATCTTCTTTCTGGAGGTATCACTTGCTATGTTTGTGCTGGGGAAGACTATTACTTTCCCTTCCCAT TGA
AA sequence Show only first row Show all	>Lus10032512 pacid=23146313 polypeptide=Lus10032512 locus=Lus10032512.g ID=Lus10032512.BGIv1.0 annot-version=v1.0 MAISTNGDGNGAPLPTSSNFFHQTYSESDLEAGDYVPTPTNTALSSYQKRQAFVMYLMANPGGFTVFGWRIDRALVNTIFFLEVSLAMFVLGKTITFPSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67570			Protein of unknown function (D...		Lus10032512 [exp]	0	1
AT2G44525			Protein of unknown function (D...		Lus10012187 [exp]	43.9	0.6350
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Lus10027554 [exp]	52.3	0.6682
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10036547 [exp]	54.3	0.6728
AT1G78210			alpha/beta-Hydrolases superfam...		Lus10020926 [exp]	88.1	0.6388
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Lus10039313 [exp]	111.6	0.6113
AT4G21620			glycine-rich protein (.1.2)		Lus10018454 [exp]	115.7	0.5968
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Lus10003403 [exp]	143.9	0.6222
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10040677 [exp]	151.6	0.5955
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10030952 [exp]	162.1	0.5919
AT5G38760			Late embryogenesis abundant pr...		Lus10034100 [exp]	170.4	0.5943

Compare expression of checked genes

Lus10032512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.