Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67570 285 / 1e-92 Protein of unknown function (DUF3537) (.1) AT3G20300 134 / 2e-35 Protein of unknown function (DUF3537) (.1) AT1G50630 132 / 2e-34 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2) AT4G03820 121 / 1e-30 Protein of unknown function (DUF3537) (.1), Protein of unknown function (DUF3537) (.2) AT4G22270 120 / 3e-30 ATMRB1 ARABIDOPSIS MEMBRANE RELATED BIGGER1, Protein of unknown function (DUF3537) (.1) AT2G21080 105 / 6e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043011 [exp] 628 / 0 AT1G67570 404 / 2e-138 Protein of unknown function (DUF3537) (.1) Lus10011371 [exp] 290 / 2e-94 AT1G67570 529 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10006430 [exp] 233 / 9e-73 AT1G67570 435 / 3e-150 Protein of unknown function (DUF3537) (.1) Lus10033919 [exp] 144 / 6e-39 AT3G20300 476 / 2e-166 Protein of unknown function (DUF3537) (.1) Lus10002334 [exp] 137 / 1e-36 AT3G20300 616 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10009722 [exp] 137 / 2e-35 AT3G20300 626 / 0.0 Protein of unknown function (DUF3537) (.1) Lus10024308 [exp] 133 / 8e-35 AT3G20300 473 / 5e-165 Protein of unknown function (DUF3537) (.1) Lus10036448 [exp] 116 / 1e-28 AT2G21080 450 / 5e-157 unknown protein Lus10032512 [exp] 74 / 3e-16 AT1G67570 94 / 5e-24 Protein of unknown function (DUF3537) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G092200 [exp] 383 / 3e-131 AT1G67570 405 / 8e-139 Protein of unknown function (DUF3537) (.1) Potri.012G094700 [exp] 378 / 2e-129 AT1G67570 417 / 2e-143 Protein of unknown function (DUF3537) (.1) Potri.008G178100 [exp] 296 / 7e-97 AT1G67570 491 / 3e-172 Protein of unknown function (DUF3537) (.1) Potri.001G356200 [exp] 139 / 5e-37 AT3G20300 613 / 0.0 Protein of unknown function (DUF3537) (.1) Potri.006G279200 [exp] 114 / 8e-28 AT2G21080 453 / 6e-158 unknown protein Potri.018G002700 [exp] 110 / 1e-26 AT2G21080 447 / 9e-156 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12056 [flax] [poplar] DUF3537 Protein of unknown function (DUF3537)
Representative CDS sequence Show only first row Show all	>Lus10032513 pacid=23146228 polypeptide=Lus10032513 locus=Lus10032513.g ID=Lus10032513.BGIv1.0 annot-version=v1.0 ATGGAGGACGCCACTTCCTCACAATCCAGGCTATTAGAACTAGAAAAGGAACACGAAGAAGAAGAAGAAAACAACTACGACGCCGACGTCTCCAAATCTC TCAACCGCCTTGAGACTTTCCTCAAAATATTCGGCTTCTGCCAGAACTCCTGGTTCGCCATCCTGCTTTCCTGGCTCTGCTTCCTCCTCATCGCCGTTGC TCTCCCGCTTTTCATCTTCTACTTCTTCGACTCTTCCACTGCCGAGATCAAGACCTTCGAGCTCGAGATTTTGGCCTTTCAGTCTCTTGTTGCTGCCTTC TCCCTTCTCTGCATTTCCCACAATCTCAGAAAATATGGCGTCCGGAAGTTCCTCTTTGCCGATCGCTCCCACGGCCACTGTTCCCAGCTGGACATTGAAT ACGCCAACAAAATTAATGATTTCTTCTCCCTGCTGTCAGTGTGGCTACTACCATGCCTCCTTGTGAAAACAGCTCGTGAAGTGATTCGTATTGTGTACCT GCGCCATGGTCCACTATGGCAATCGACTGGTCTTCTGATTGCGTTGACTGTCTCCTGGACTTACTCCAGTGTTATCTTCCTCTCCGGCTGCACTTTGTTC AACTTAGTATGCAACTTCCAAGTCATACGGTTTGACAACTATGGCAAGCTCCTTGAGACAGACTTGGAAGTTTCTGAATACATTGAGGAACATATTCGTC TTACACATTACATGTCCAAGATAAGCCACAGGTTCAGACTCTTCTTTGTTTTCGAGCTCTTGATTGTCACAGCCAGTCTGTTTGTCGCTTTGGTTGAAAC TACTGGGAATCACGGCCTCATCAATCTCATCAATGGAGCTGATTTTGGGGTTACTGCTATAGTTGAGCTTGTTGGACTAGTGATATGCCTACATGCAGCG ACCAAGGTATCGCATCGAGCTCAAGGTATAGTGTCGGTAGCCACTAGATGGCATTCTTTGTCTACTTGTACATCCAGTGAGACGACTTCTCAAATGGCAA TAAGCACCAATGGCGATGGTAATGGGGCCCCTCTTCCCACTTCCTCGAACTTCTTCCACCAGACTTACTCGGAGAGCGATTTAGAGGCAGGTTTTGGTGT GGGTAGCCACTAG
AA sequence Show only first row Show all	>Lus10032513 pacid=23146228 polypeptide=Lus10032513 locus=Lus10032513.g ID=Lus10032513.BGIv1.0 annot-version=v1.0 MEDATSSQSRLLELEKEHEEEEENNYDADVSKSLNRLETFLKIFGFCQNSWFAILLSWLCFLLIAVALPLFIFYFFDSSTAEIKTFELEILAFQSLVAAF SLLCISHNLRKYGVRKFLFADRSHGHCSQLDIEYANKINDFFSLLSVWLLPCLLVKTAREVIRIVYLRHGPLWQSTGLLIALTVSWTYSSVIFLSGCTLF NLVCNFQVIRFDNYGKLLETDLEVSEYIEEHIRLTHYMSKISHRFRLFFVFELLIVTASLFVALVETTGNHGLINLINGADFGVTAIVELVGLVICLHAA TKVSHRAQGIVSVATRWHSLSTCTSSETTSQMAISTNGDGNGAPLPTSSNFFHQTYSESDLEAGFGVGSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67570			Protein of unknown function (D...		Lus10032513 [exp]	0	1
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10000404 [exp]	7.7	0.7672
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10042392 [exp]	14.7	0.7805
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10031063 [exp]	16.7	0.7703
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Lus10021356 [exp]	18.0	0.7142
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10004339 [exp]	18.4	0.7287
AT3G61260			Remorin family protein (.1)		Lus10027460 [exp]	24.8	0.7449
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030518 [exp]	24.9	0.7655
AT3G49050			alpha/beta-Hydrolases superfam...		Lus10039240 [exp]	32.0	0.7338
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012868 [exp]	36.6	0.7590
AT5G16540	C3HZnF	ZFN3	zinc finger nuclease 3 (.1.2.3...		Lus10031527 [exp]	42.7	0.6864

Compare expression of checked genes

Lus10032513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.